miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20045 5' -54.1 NC_004687.1 + 82035 0.66 0.965084
Target:  5'- uACCGGCGGuagcGGUggcaGCGCgUCCGGCGg -3'
miRNA:   3'- -UGGUUGCU----CCAaa--UGUGgGGGCUGCa -5'
20045 5' -54.1 NC_004687.1 + 124632 0.66 0.965084
Target:  5'- -gCGACGAGGUcgccGCACCCaucuucaccgCCGAUGa -3'
miRNA:   3'- ugGUUGCUCCAaa--UGUGGG----------GGCUGCa -5'
20045 5' -54.1 NC_004687.1 + 92113 0.66 0.965084
Target:  5'- uGCuCGACGuGGUUgcgguCGCCggugCCCGACGa -3'
miRNA:   3'- -UG-GUUGCuCCAAau---GUGG----GGGCUGCa -5'
20045 5' -54.1 NC_004687.1 + 31118 0.66 0.961696
Target:  5'- uCCAGCGgcgaagguugucGGGUUguagACGacaCCCUGACGUg -3'
miRNA:   3'- uGGUUGC------------UCCAAa---UGUg--GGGGCUGCA- -5'
20045 5' -54.1 NC_004687.1 + 68346 0.66 0.961696
Target:  5'- cACCGGCGcGGUcgGCAUCagCUCGACGa -3'
miRNA:   3'- -UGGUUGCuCCAaaUGUGG--GGGCUGCa -5'
20045 5' -54.1 NC_004687.1 + 94195 0.66 0.961696
Target:  5'- gGCCAACGuGGgcgugGCgCCCGGCGc -3'
miRNA:   3'- -UGGUUGCuCCaaaugUGgGGGCUGCa -5'
20045 5' -54.1 NC_004687.1 + 149195 0.66 0.958085
Target:  5'- cACCGACGAGGUgcgUGCGgCCaagaagcaaCGAgCGUu -3'
miRNA:   3'- -UGGUUGCUCCAa--AUGUgGGg--------GCU-GCA- -5'
20045 5' -54.1 NC_004687.1 + 150349 0.66 0.958085
Target:  5'- cGCCGACGAGG---GCGCCag-GACGUc -3'
miRNA:   3'- -UGGUUGCUCCaaaUGUGGgggCUGCA- -5'
20045 5' -54.1 NC_004687.1 + 12190 0.66 0.954249
Target:  5'- gACCAGC-AGGUUggucguCGCCgCCCaGGCGUc -3'
miRNA:   3'- -UGGUUGcUCCAAau----GUGG-GGG-CUGCA- -5'
20045 5' -54.1 NC_004687.1 + 70164 0.66 0.954249
Target:  5'- uACC-ACGAGGUcauccgguuCACcgaCCCCGACGa -3'
miRNA:   3'- -UGGuUGCUCCAaau------GUG---GGGGCUGCa -5'
20045 5' -54.1 NC_004687.1 + 75901 0.66 0.954249
Target:  5'- cCCGGCGuugcGGgagUAC-CCCUCGACGg -3'
miRNA:   3'- uGGUUGCu---CCaa-AUGuGGGGGCUGCa -5'
20045 5' -54.1 NC_004687.1 + 6357 0.66 0.954249
Target:  5'- uGCUGACcAGGUUgACcuCCUCCGGCGUa -3'
miRNA:   3'- -UGGUUGcUCCAAaUGu-GGGGGCUGCA- -5'
20045 5' -54.1 NC_004687.1 + 117601 0.66 0.954249
Target:  5'- aGCUGGCcGGGUU--CACCCCgGGCGa -3'
miRNA:   3'- -UGGUUGcUCCAAauGUGGGGgCUGCa -5'
20045 5' -54.1 NC_004687.1 + 49551 0.66 0.950182
Target:  5'- gGCCAACGAGGccggUGgcccgguggcCACCgaggucaaCCCGACGg -3'
miRNA:   3'- -UGGUUGCUCCaa--AU----------GUGG--------GGGCUGCa -5'
20045 5' -54.1 NC_004687.1 + 129579 0.67 0.945881
Target:  5'- aGCCGACGuGGUUgccuuCCauCCCGACGc -3'
miRNA:   3'- -UGGUUGCuCCAAaugu-GG--GGGCUGCa -5'
20045 5' -54.1 NC_004687.1 + 83479 0.67 0.945881
Target:  5'- gGCUGACGAGGUcuucUAUcgGCCCUaCGACGa -3'
miRNA:   3'- -UGGUUGCUCCAa---AUG--UGGGG-GCUGCa -5'
20045 5' -54.1 NC_004687.1 + 87645 0.67 0.945881
Target:  5'- cCCAGCGAGGacuacaACACCgaCUGGCGg -3'
miRNA:   3'- uGGUUGCUCCaaa---UGUGGg-GGCUGCa -5'
20045 5' -54.1 NC_004687.1 + 34530 0.67 0.945881
Target:  5'- gUCGACGAGG---ACGgCCCCGAgGg -3'
miRNA:   3'- uGGUUGCUCCaaaUGUgGGGGCUgCa -5'
20045 5' -54.1 NC_004687.1 + 12752 0.67 0.941342
Target:  5'- cACCGACGAGuGgg-ACuCCCCCGGa-- -3'
miRNA:   3'- -UGGUUGCUC-CaaaUGuGGGGGCUgca -5'
20045 5' -54.1 NC_004687.1 + 128717 0.67 0.941342
Target:  5'- uUCAGCG-GGUU---GCCCUCGGCGUc -3'
miRNA:   3'- uGGUUGCuCCAAaugUGGGGGCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.