miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2005 5' -56.9 NC_001347.2 + 153767 0.66 0.930816
Target:  5'- uCGCGCCaGUGCGcCGUCGaC-GCCg---- -3'
miRNA:   3'- -GCGCGG-CACGU-GCAGC-GaCGGauauu -5'
2005 5' -56.9 NC_001347.2 + 192623 0.66 0.930816
Target:  5'- aCGCGCCGgcagcugcaGCACGUggagaCGCUGCgUcgGu -3'
miRNA:   3'- -GCGCGGCa--------CGUGCA-----GCGACGgAuaUu -5'
2005 5' -56.9 NC_001347.2 + 161597 0.66 0.920289
Target:  5'- aCGCGuCCGgGUuccaGUCGCUGCCa---- -3'
miRNA:   3'- -GCGC-GGCaCGug--CAGCGACGGauauu -5'
2005 5' -56.9 NC_001347.2 + 155686 0.66 0.920289
Target:  5'- uGCGCCGcGCGucuacgaucUGUUGCUGCCc---- -3'
miRNA:   3'- gCGCGGCaCGU---------GCAGCGACGGauauu -5'
2005 5' -56.9 NC_001347.2 + 14295 0.66 0.920289
Target:  5'- uGcCGCCGgaGCucccCG-CGCUGCCUGUGg -3'
miRNA:   3'- gC-GCGGCa-CGu---GCaGCGACGGAUAUu -5'
2005 5' -56.9 NC_001347.2 + 197032 0.67 0.896504
Target:  5'- aCGCGCCGcaggaucGCACG-CGgCUGCCg---- -3'
miRNA:   3'- -GCGCGGCa------CGUGCaGC-GACGGauauu -5'
2005 5' -56.9 NC_001347.2 + 8365 0.67 0.883276
Target:  5'- gGCGCCGUGCA-GUUGCcgcGCCc---- -3'
miRNA:   3'- gCGCGGCACGUgCAGCGa--CGGauauu -5'
2005 5' -56.9 NC_001347.2 + 2490 0.67 0.87634
Target:  5'- cCGCGCUGUGgGCG-CGCgaGCCg---- -3'
miRNA:   3'- -GCGCGGCACgUGCaGCGa-CGGauauu -5'
2005 5' -56.9 NC_001347.2 + 645 0.68 0.861845
Target:  5'- aCGCGCCugccGCGCGUCuuccuucggguaGCUGCCUu--- -3'
miRNA:   3'- -GCGCGGca--CGUGCAG------------CGACGGAuauu -5'
2005 5' -56.9 NC_001347.2 + 169066 0.68 0.861845
Target:  5'- uCGCGCCuccaacgucucGgccaGCACG-CGCUGCCUGc-- -3'
miRNA:   3'- -GCGCGG-----------Ca---CGUGCaGCGACGGAUauu -5'
2005 5' -56.9 NC_001347.2 + 158599 0.68 0.861845
Target:  5'- gGCcuGCUGUGCGCG-CGCUGUCa---- -3'
miRNA:   3'- gCG--CGGCACGUGCaGCGACGGauauu -5'
2005 5' -56.9 NC_001347.2 + 210980 0.68 0.854297
Target:  5'- aCGaUGCCGUGCuuGUCauGCUGCCa---- -3'
miRNA:   3'- -GC-GCGGCACGugCAG--CGACGGauauu -5'
2005 5' -56.9 NC_001347.2 + 2245 0.68 0.854297
Target:  5'- gCGCGCCaUGCugGUggUGCUGCUg---- -3'
miRNA:   3'- -GCGCGGcACGugCA--GCGACGGauauu -5'
2005 5' -56.9 NC_001347.2 + 229919 0.68 0.845772
Target:  5'- gCGCGCC--GCACGUCGCUuuuauucGCCg---- -3'
miRNA:   3'- -GCGCGGcaCGUGCAGCGA-------CGGauauu -5'
2005 5' -56.9 NC_001347.2 + 440 0.68 0.845772
Target:  5'- gCGCGCC--GCACGUCGCUuuuauucGCCg---- -3'
miRNA:   3'- -GCGCGGcaCGUGCAGCGA-------CGGauauu -5'
2005 5' -56.9 NC_001347.2 + 187356 0.68 0.838629
Target:  5'- gCGUgGCCGUgGCGCGUCGCgGCUa---- -3'
miRNA:   3'- -GCG-CGGCA-CGUGCAGCGaCGGauauu -5'
2005 5' -56.9 NC_001347.2 + 162031 0.69 0.817192
Target:  5'- uGCGCCGUGCucagcugcuCGUCGCguugucgcaacugcGUCUGUAc -3'
miRNA:   3'- gCGCGGCACGu--------GCAGCGa-------------CGGAUAUu -5'
2005 5' -56.9 NC_001347.2 + 40446 0.69 0.813795
Target:  5'- gCGUGuuGUGUcCGaCGCUGCCUGc-- -3'
miRNA:   3'- -GCGCggCACGuGCaGCGACGGAUauu -5'
2005 5' -56.9 NC_001347.2 + 1916 0.69 0.813795
Target:  5'- gGCGCUGgGCGCGgUGCUGCCc---- -3'
miRNA:   3'- gCGCGGCaCGUGCaGCGACGGauauu -5'
2005 5' -56.9 NC_001347.2 + 193490 0.69 0.80519
Target:  5'- gGCGCCGUGUucgccuACGaCGCgcaagaggacUGCCUGUAc -3'
miRNA:   3'- gCGCGGCACG------UGCaGCG----------ACGGAUAUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.