miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20063 3' -54.7 NC_004687.1 + 102032 0.65 0.946285
Target:  5'- --cGGAccucgUGCAGCGCGUCGagaucccagucguaCCGGGu-- -3'
miRNA:   3'- acaCCU-----ACGUCGUGCAGC--------------GGCCUuug -5'
20063 3' -54.7 NC_004687.1 + 140816 0.66 0.943126
Target:  5'- gGUGGccuugGCGacCGCGUCGCCGuAGACg -3'
miRNA:   3'- aCACCua---CGUc-GUGCAGCGGCcUUUG- -5'
20063 3' -54.7 NC_004687.1 + 34586 0.66 0.943126
Target:  5'- -cUGGGUgaGCAGCugGUCGuuGcGcgGCa -3'
miRNA:   3'- acACCUA--CGUCGugCAGCggC-CuuUG- -5'
20063 3' -54.7 NC_004687.1 + 87075 0.66 0.943126
Target:  5'- --cGGAUGCcGUGCGUgGCC-GAGGCc -3'
miRNA:   3'- acaCCUACGuCGUGCAgCGGcCUUUG- -5'
20063 3' -54.7 NC_004687.1 + 20333 0.66 0.943126
Target:  5'- ------cGUAGCugGUCGgaCCGGGAGCg -3'
miRNA:   3'- acaccuaCGUCGugCAGC--GGCCUUUG- -5'
20063 3' -54.7 NC_004687.1 + 128133 0.66 0.943126
Target:  5'- gGUGGucgaGCAGCGCGcggGCUGGcuGCa -3'
miRNA:   3'- aCACCua--CGUCGUGCag-CGGCCuuUG- -5'
20063 3' -54.7 NC_004687.1 + 9644 0.66 0.943126
Target:  5'- cGUGGGUaucaAGCGCGUCGucaCCGGcuGGACc -3'
miRNA:   3'- aCACCUAcg--UCGUGCAGC---GGCC--UUUG- -5'
20063 3' -54.7 NC_004687.1 + 56479 0.66 0.941736
Target:  5'- -aUGGuUGCAGCGCucagcccaacgcauGcgcaCGCCGGggGCg -3'
miRNA:   3'- acACCuACGUCGUG--------------Ca---GCGGCCuuUG- -5'
20063 3' -54.7 NC_004687.1 + 106083 0.66 0.938407
Target:  5'- cGUGcuucucGCAGCACGauUCccaggGCCGGGAACa -3'
miRNA:   3'- aCACcua---CGUCGUGC--AG-----CGGCCUUUG- -5'
20063 3' -54.7 NC_004687.1 + 20438 0.66 0.938407
Target:  5'- gUGUGGAUGUgcagggcgaucGGCACGagcgCGuCCGGcaccAGGCg -3'
miRNA:   3'- -ACACCUACG-----------UCGUGCa---GC-GGCC----UUUG- -5'
20063 3' -54.7 NC_004687.1 + 71609 0.66 0.938407
Target:  5'- cGUGGGguCGGCGCuGUUGCCGuAGACc -3'
miRNA:   3'- aCACCUacGUCGUG-CAGCGGCcUUUG- -5'
20063 3' -54.7 NC_004687.1 + 31158 0.66 0.938407
Target:  5'- cGUGGAgcggcaauggUGCGGguggcggugacCACGgaaaCGCCGGAGAg -3'
miRNA:   3'- aCACCU----------ACGUC-----------GUGCa---GCGGCCUUUg -5'
20063 3' -54.7 NC_004687.1 + 58022 0.66 0.938407
Target:  5'- aGUcGGGUGUGGC-CGgacgCGCCGaGAACg -3'
miRNA:   3'- aCA-CCUACGUCGuGCa---GCGGCcUUUG- -5'
20063 3' -54.7 NC_004687.1 + 129393 0.66 0.933443
Target:  5'- cGUGGAc-CGGCACGUCGUacuUGGugGCc -3'
miRNA:   3'- aCACCUacGUCGUGCAGCG---GCCuuUG- -5'
20063 3' -54.7 NC_004687.1 + 12884 0.66 0.933443
Target:  5'- gGUGcGcgGCGGCGa-UCGCCGGGc-- -3'
miRNA:   3'- aCAC-CuaCGUCGUgcAGCGGCCUuug -5'
20063 3' -54.7 NC_004687.1 + 72253 0.66 0.933443
Target:  5'- gGUGG-UGguGUACGggucggCGCCGuuGACg -3'
miRNA:   3'- aCACCuACguCGUGCa-----GCGGCcuUUG- -5'
20063 3' -54.7 NC_004687.1 + 13970 0.66 0.928235
Target:  5'- --cGGAcagacGCugGUCGUCGGAGGCa -3'
miRNA:   3'- acaCCUacgu-CGugCAGCGGCCUUUG- -5'
20063 3' -54.7 NC_004687.1 + 87148 0.66 0.928235
Target:  5'- gUGUGccGGUGCGGgucaACGUCaGCCGGuccGACg -3'
miRNA:   3'- -ACAC--CUACGUCg---UGCAG-CGGCCu--UUG- -5'
20063 3' -54.7 NC_004687.1 + 149774 0.66 0.92278
Target:  5'- ---cGAUGCGGuCugGUgCGCCGGAcuGGCc -3'
miRNA:   3'- acacCUACGUC-GugCA-GCGGCCU--UUG- -5'
20063 3' -54.7 NC_004687.1 + 35616 0.66 0.92278
Target:  5'- gGUGGcgccggucGguGC-CGUCGCCGGGGu- -3'
miRNA:   3'- aCACCua------CguCGuGCAGCGGCCUUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.