miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20072 3' -51.4 NC_004687.1 + 76864 0.66 0.993187
Target:  5'- uCAACUggacCGGCUUCAucaccgauuuccAGGUCGucgagaaguGGGACGu -3'
miRNA:   3'- -GUUGAa---GCCGGAGU------------UCCAGC---------UCUUGC- -5'
20072 3' -51.4 NC_004687.1 + 45863 0.66 0.993187
Target:  5'- -cGCUgcaggaaGGCCUCAugccGGUCGAGGuACu -3'
miRNA:   3'- guUGAag-----CCGGAGUu---CCAGCUCU-UGc -5'
20072 3' -51.4 NC_004687.1 + 4414 0.66 0.993187
Target:  5'- gAGCgcgaGGUgaUCAGGGUCGAGGAUc -3'
miRNA:   3'- gUUGaag-CCGg-AGUUCCAGCUCUUGc -5'
20072 3' -51.4 NC_004687.1 + 34034 0.66 0.993187
Target:  5'- gAACccggaaGGCCUgGAGGcgCGAGGGCa -3'
miRNA:   3'- gUUGaag---CCGGAgUUCCa-GCUCUUGc -5'
20072 3' -51.4 NC_004687.1 + 150635 0.66 0.990647
Target:  5'- ---gUUCGGCCcggucgacaccuauUCGAGcGUCGAGGAUc -3'
miRNA:   3'- guugAAGCCGG--------------AGUUC-CAGCUCUUGc -5'
20072 3' -51.4 NC_004687.1 + 99817 0.66 0.989742
Target:  5'- -uGCUUgGGCUUCAAGGUcCGcAGGuCGu -3'
miRNA:   3'- guUGAAgCCGGAGUUCCA-GC-UCUuGC- -5'
20072 3' -51.4 NC_004687.1 + 79377 0.66 0.989742
Target:  5'- -uACUUCGGUCUCGAuGG-CaAGGGCGc -3'
miRNA:   3'- guUGAAGCCGGAGUU-CCaGcUCUUGC- -5'
20072 3' -51.4 NC_004687.1 + 40264 0.66 0.988332
Target:  5'- gAACUgcUCGGgCUCGuAGGccagCGAGGACa -3'
miRNA:   3'- gUUGA--AGCCgGAGU-UCCa---GCUCUUGc -5'
20072 3' -51.4 NC_004687.1 + 9863 0.66 0.988332
Target:  5'- uGGCgcgCGGUCUCGGcGUCGGGAcCGa -3'
miRNA:   3'- gUUGaa-GCCGGAGUUcCAGCUCUuGC- -5'
20072 3' -51.4 NC_004687.1 + 67902 0.66 0.988332
Target:  5'- aCGGCgUCGGCaacacCAAGGUCGAuccGGACu -3'
miRNA:   3'- -GUUGaAGCCGga---GUUCCAGCU---CUUGc -5'
20072 3' -51.4 NC_004687.1 + 85923 0.67 0.985065
Target:  5'- aCGACUUCGGCCUgggaucCAAcGUCGGacGCGc -3'
miRNA:   3'- -GUUGAAGCCGGA------GUUcCAGCUcuUGC- -5'
20072 3' -51.4 NC_004687.1 + 153606 0.67 0.985065
Target:  5'- uCAACUUCGGCgaUCAAc-UCGGGAACc -3'
miRNA:   3'- -GUUGAAGCCGg-AGUUccAGCUCUUGc -5'
20072 3' -51.4 NC_004687.1 + 142833 0.67 0.983191
Target:  5'- aCAACUaCGGCCagcucaccgugcUCGAuGG-CGAGAACa -3'
miRNA:   3'- -GUUGAaGCCGG------------AGUU-CCaGCUCUUGc -5'
20072 3' -51.4 NC_004687.1 + 115166 0.67 0.983191
Target:  5'- gCGGCUUCGGCUgccgacaccccaUCAGGGacccCGAGccuGCGg -3'
miRNA:   3'- -GUUGAAGCCGG------------AGUUCCa---GCUCu--UGC- -5'
20072 3' -51.4 NC_004687.1 + 117224 0.67 0.983191
Target:  5'- uGGCUUCGGCaucccCGAGGgcgcCGAGAAgGu -3'
miRNA:   3'- gUUGAAGCCGga---GUUCCa---GCUCUUgC- -5'
20072 3' -51.4 NC_004687.1 + 74398 0.67 0.981144
Target:  5'- gAGCUcgUCGGagaCCUCGAuGUUGGGGACGa -3'
miRNA:   3'- gUUGA--AGCC---GGAGUUcCAGCUCUUGC- -5'
20072 3' -51.4 NC_004687.1 + 149607 0.67 0.981144
Target:  5'- gGACgUCGGCCUCGAcgauccggccccGGUCGAucuGCa -3'
miRNA:   3'- gUUGaAGCCGGAGUU------------CCAGCUcu-UGc -5'
20072 3' -51.4 NC_004687.1 + 82318 0.68 0.976499
Target:  5'- cCAGCUggCGGUCgucCAGGGUCGGGccaAGCu -3'
miRNA:   3'- -GUUGAa-GCCGGa--GUUCCAGCUC---UUGc -5'
20072 3' -51.4 NC_004687.1 + 151964 0.68 0.976499
Target:  5'- --uCUUCGGCCUCGAugauGGU-GAGGAUc -3'
miRNA:   3'- guuGAAGCCGGAGUU----CCAgCUCUUGc -5'
20072 3' -51.4 NC_004687.1 + 132439 0.68 0.976499
Target:  5'- uCAGCUgcucgaugaaCGGCCUgcccugCGGGGUCGAGAcuuccggggcaGCGg -3'
miRNA:   3'- -GUUGAa---------GCCGGA------GUUCCAGCUCU-----------UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.