miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20072 5' -58.7 NC_004687.1 + 74374 0.66 0.810183
Target:  5'- aAGgGUGCCgGucugCUCGGCGCCGGg-- -3'
miRNA:   3'- -UCgCACGGgUug--GAGCUGCGGCUgau -5'
20072 5' -58.7 NC_004687.1 + 7174 0.66 0.810183
Target:  5'- uGCGUGUCCAGCacgccaUCGGUGCCGcaauccagGCUGa -3'
miRNA:   3'- uCGCACGGGUUGg-----AGCUGCGGC--------UGAU- -5'
20072 5' -58.7 NC_004687.1 + 145291 0.66 0.810183
Target:  5'- cGGCGUugGCCUGAgaUUCGGCGCUGGCc- -3'
miRNA:   3'- -UCGCA--CGGGUUg-GAGCUGCGGCUGau -5'
20072 5' -58.7 NC_004687.1 + 115870 0.66 0.810183
Target:  5'- cGGCG-GCUCu-CCUCGGCGCCa---- -3'
miRNA:   3'- -UCGCaCGGGuuGGAGCUGCGGcugau -5'
20072 5' -58.7 NC_004687.1 + 90218 0.66 0.810183
Target:  5'- -aUGUGCUggaagaaGGCCUCGcCGCCGACg- -3'
miRNA:   3'- ucGCACGGg------UUGGAGCuGCGGCUGau -5'
20072 5' -58.7 NC_004687.1 + 111272 0.66 0.810183
Target:  5'- cGCGaGCUCAGCUUCGACGagaUGGCc- -3'
miRNA:   3'- uCGCaCGGGUUGGAGCUGCg--GCUGau -5'
20072 5' -58.7 NC_004687.1 + 71011 0.66 0.801448
Target:  5'- cGCGUcuggGCCCGGggUCUCGACGaccuCCGGCUc -3'
miRNA:   3'- uCGCA----CGGGUU--GGAGCUGC----GGCUGAu -5'
20072 5' -58.7 NC_004687.1 + 25558 0.66 0.801448
Target:  5'- cGCG-GCCCGccguggagAUCUCGACGauCUGGCUGa -3'
miRNA:   3'- uCGCaCGGGU--------UGGAGCUGC--GGCUGAU- -5'
20072 5' -58.7 NC_004687.1 + 69015 0.66 0.801448
Target:  5'- uGGCGcUGaCCAGCCUgGAgcgcgaccguauCGCCGACa- -3'
miRNA:   3'- -UCGC-ACgGGUUGGAgCU------------GCGGCUGau -5'
20072 5' -58.7 NC_004687.1 + 87739 0.66 0.801448
Target:  5'- cGCuggGCCCGcAgCUgGGCGCCGACg- -3'
miRNA:   3'- uCGca-CGGGU-UgGAgCUGCGGCUGau -5'
20072 5' -58.7 NC_004687.1 + 34293 0.66 0.792564
Target:  5'- cAGUugGUGgCCGACCUCuACaCCGACUGg -3'
miRNA:   3'- -UCG--CACgGGUUGGAGcUGcGGCUGAU- -5'
20072 5' -58.7 NC_004687.1 + 26393 0.66 0.792564
Target:  5'- cGcCGUGaCCCGGCCUgGcCGCuCGACa- -3'
miRNA:   3'- uC-GCAC-GGGUUGGAgCuGCG-GCUGau -5'
20072 5' -58.7 NC_004687.1 + 36175 0.66 0.792564
Target:  5'- aGGCGUGUuuCCAGCCgUUGcCGCCGGg-- -3'
miRNA:   3'- -UCGCACG--GGUUGG-AGCuGCGGCUgau -5'
20072 5' -58.7 NC_004687.1 + 20724 0.66 0.792564
Target:  5'- uGGUGUaGCCCuGCCggucgcgccCGAgGCCGACg- -3'
miRNA:   3'- -UCGCA-CGGGuUGGa--------GCUgCGGCUGau -5'
20072 5' -58.7 NC_004687.1 + 110471 0.66 0.792564
Target:  5'- aGGCGUcuguGCCCGcACCggUGGCGuCCGGCg- -3'
miRNA:   3'- -UCGCA----CGGGU-UGGa-GCUGC-GGCUGau -5'
20072 5' -58.7 NC_004687.1 + 151742 0.66 0.792564
Target:  5'- gGGCGccGCCgGGCCaacgUGACGCCGuACUu -3'
miRNA:   3'- -UCGCa-CGGgUUGGa---GCUGCGGC-UGAu -5'
20072 5' -58.7 NC_004687.1 + 135887 0.66 0.787165
Target:  5'- gAGCuggGCCCGGgCgugguggucgucugCGACGCCGACa- -3'
miRNA:   3'- -UCGca-CGGGUUgGa-------------GCUGCGGCUGau -5'
20072 5' -58.7 NC_004687.1 + 144203 0.66 0.783539
Target:  5'- cAGCcUGUaucgCCAGCgCgucggCGGCGCCGACUAc -3'
miRNA:   3'- -UCGcACG----GGUUG-Ga----GCUGCGGCUGAU- -5'
20072 5' -58.7 NC_004687.1 + 7947 0.66 0.783539
Target:  5'- cGCGU-CCCGGCggCUCGuCGuCCGGCUAc -3'
miRNA:   3'- uCGCAcGGGUUG--GAGCuGC-GGCUGAU- -5'
20072 5' -58.7 NC_004687.1 + 108932 0.66 0.783539
Target:  5'- cGGCGgcugaUGCCU-GCCgaaGACGUCGACUAa -3'
miRNA:   3'- -UCGC-----ACGGGuUGGag-CUGCGGCUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.