miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20080 5' -53.7 NC_004687.1 + 142485 0.66 0.973141
Target:  5'- gCCgCgcucgCGcAGGaAGcGGGCGAUGGCGACc -3'
miRNA:   3'- -GGgGaa---GC-UCC-UC-CUUGUUACCGCUG- -5'
20080 5' -53.7 NC_004687.1 + 3502 0.66 0.973141
Target:  5'- gCCCgUUUGAGGucugGGGGugAAUcGGUGAg -3'
miRNA:   3'- -GGGgAAGCUCC----UCCUugUUA-CCGCUg -5'
20080 5' -53.7 NC_004687.1 + 28929 0.66 0.973141
Target:  5'- aCCCgcaaGAGGGcGGGACcgcgccaagGGCGACu -3'
miRNA:   3'- gGGGaag-CUCCU-CCUUGuua------CCGCUG- -5'
20080 5' -53.7 NC_004687.1 + 90369 0.66 0.970316
Target:  5'- aCCCUggagggugaCGAGGAGG-ACGAgcuguaccUGGcCGACc -3'
miRNA:   3'- gGGGAa--------GCUCCUCCuUGUU--------ACC-GCUG- -5'
20080 5' -53.7 NC_004687.1 + 16781 0.66 0.967285
Target:  5'- gCCCCggggCGAGGAcuGGGuguCGGUcGGCGGu -3'
miRNA:   3'- -GGGGaa--GCUCCU--CCUu--GUUA-CCGCUg -5'
20080 5' -53.7 NC_004687.1 + 31151 0.66 0.967285
Target:  5'- aCCCUgaCGuGGAGcGGCAAUGGUG-Cg -3'
miRNA:   3'- -GGGGaaGCuCCUCcUUGUUACCGCuG- -5'
20080 5' -53.7 NC_004687.1 + 50352 0.66 0.967285
Target:  5'- aUCCCUUCGGGccuGGuGCAG-GGCGcACa -3'
miRNA:   3'- -GGGGAAGCUCcu-CCuUGUUaCCGC-UG- -5'
20080 5' -53.7 NC_004687.1 + 133964 0.66 0.96404
Target:  5'- aUCCCacCGAGGAGGucGACGAcUGG-GACc -3'
miRNA:   3'- -GGGGaaGCUCCUCC--UUGUU-ACCgCUG- -5'
20080 5' -53.7 NC_004687.1 + 32821 0.66 0.96404
Target:  5'- gCCC-UCGucuGGAGGGugAGcaucUGGUGAUg -3'
miRNA:   3'- gGGGaAGCu--CCUCCUugUU----ACCGCUG- -5'
20080 5' -53.7 NC_004687.1 + 11396 0.66 0.96404
Target:  5'- gCCCgucgUCGucGAGGcguuGCAGUggaccGGCGACa -3'
miRNA:   3'- gGGGa---AGCucCUCCu---UGUUA-----CCGCUG- -5'
20080 5' -53.7 NC_004687.1 + 28207 0.66 0.960577
Target:  5'- aCCUguaCGGGGGcGAGCAGgacggcUGGCGGCg -3'
miRNA:   3'- gGGGaa-GCUCCUcCUUGUU------ACCGCUG- -5'
20080 5' -53.7 NC_004687.1 + 36421 0.67 0.95689
Target:  5'- aCCCgaCGAGGucGGAguACAuguUGGUGGCc -3'
miRNA:   3'- gGGGaaGCUCCu-CCU--UGUu--ACCGCUG- -5'
20080 5' -53.7 NC_004687.1 + 21088 0.67 0.939822
Target:  5'- gCCCCgcacCGAGGAaaagcGuGAGCAccccGGCGACa -3'
miRNA:   3'- -GGGGaa--GCUCCU-----C-CUUGUua--CCGCUG- -5'
20080 5' -53.7 NC_004687.1 + 105231 0.67 0.939822
Target:  5'- gCCCagaCGAGGAgcguGGAACAG-GGcCGACa -3'
miRNA:   3'- gGGGaa-GCUCCU----CCUUGUUaCC-GCUG- -5'
20080 5' -53.7 NC_004687.1 + 136145 0.68 0.924508
Target:  5'- aCUCgUCGuGGGuggccGGGGCGGUGGUGGCg -3'
miRNA:   3'- gGGGaAGCuCCU-----CCUUGUUACCGCUG- -5'
20080 5' -53.7 NC_004687.1 + 39099 0.68 0.918917
Target:  5'- cCCUCUUCGAa-GGGGGCGAucUGGuCGACc -3'
miRNA:   3'- -GGGGAAGCUccUCCUUGUU--ACC-GCUG- -5'
20080 5' -53.7 NC_004687.1 + 114972 0.68 0.913085
Target:  5'- gCCCCg-CGAGGAcgcGGcAGCAcgGcGCGACc -3'
miRNA:   3'- -GGGGaaGCUCCU---CC-UUGUuaC-CGCUG- -5'
20080 5' -53.7 NC_004687.1 + 103093 0.68 0.907012
Target:  5'- aCCCU-CGGGGAGGuc----GGCGAUg -3'
miRNA:   3'- gGGGAaGCUCCUCCuuguuaCCGCUG- -5'
20080 5' -53.7 NC_004687.1 + 38521 0.69 0.9007
Target:  5'- aCCCUgggcaUCGAGGAcauGGGCGAcGGCGAg -3'
miRNA:   3'- gGGGA-----AGCUCCUc--CUUGUUaCCGCUg -5'
20080 5' -53.7 NC_004687.1 + 7517 0.7 0.865675
Target:  5'- aCgCCga-GAGG-GGAACAAgcccgGGCGACu -3'
miRNA:   3'- -GgGGaagCUCCuCCUUGUUa----CCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.