miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20081 5' -57.4 NC_004687.1 + 107270 0.66 0.895473
Target:  5'- gCCUGCaGGACCAUGGCcucgAACaccuUCuGGUCg -3'
miRNA:   3'- gGGGCGaCCUGGUGCUG----UUG----AG-CCAG- -5'
20081 5' -57.4 NC_004687.1 + 22731 0.66 0.895473
Target:  5'- gCCCUGCUGG-CCGCugucGACGcccugaccgGCgccgUGGUCg -3'
miRNA:   3'- -GGGGCGACCuGGUG----CUGU---------UGa---GCCAG- -5'
20081 5' -57.4 NC_004687.1 + 92126 0.66 0.895473
Target:  5'- uCgCCGCUccgGGGCCGCGACcaa--GGUCc -3'
miRNA:   3'- -GgGGCGA---CCUGGUGCUGuugagCCAG- -5'
20081 5' -57.4 NC_004687.1 + 64891 0.66 0.895473
Target:  5'- aUCCCGCgcgUGGGCCuCGGCGcgGCgCGGg- -3'
miRNA:   3'- -GGGGCG---ACCUGGuGCUGU--UGaGCCag -5'
20081 5' -57.4 NC_004687.1 + 25062 0.66 0.895473
Target:  5'- aCCCCGCgucaGGuCUuCGACGAacUGGUCa -3'
miRNA:   3'- -GGGGCGa---CCuGGuGCUGUUgaGCCAG- -5'
20081 5' -57.4 NC_004687.1 + 129109 0.66 0.888943
Target:  5'- aCCUCGUUGGugACCGgucCGGCGcGCUCGGcCu -3'
miRNA:   3'- -GGGGCGACC--UGGU---GCUGU-UGAGCCaG- -5'
20081 5' -57.4 NC_004687.1 + 87417 0.66 0.888943
Target:  5'- gCCCCGCgcgcGGuCgACGACGACcCGuUCa -3'
miRNA:   3'- -GGGGCGa---CCuGgUGCUGUUGaGCcAG- -5'
20081 5' -57.4 NC_004687.1 + 138870 0.66 0.888943
Target:  5'- gCCCCGgaGGuccacacCCACGACcagGACgaaaucgaCGGUCu -3'
miRNA:   3'- -GGGGCgaCCu------GGUGCUG---UUGa-------GCCAG- -5'
20081 5' -57.4 NC_004687.1 + 105848 0.66 0.888943
Target:  5'- aCCCUGC-GuGACCugguCGGCGACgaGGUCu -3'
miRNA:   3'- -GGGGCGaC-CUGGu---GCUGUUGagCCAG- -5'
20081 5' -57.4 NC_004687.1 + 137810 0.66 0.888943
Target:  5'- gCCCGCgc-GCC-CgGGCgAACUCGGUCa -3'
miRNA:   3'- gGGGCGaccUGGuG-CUG-UUGAGCCAG- -5'
20081 5' -57.4 NC_004687.1 + 119211 0.66 0.882196
Target:  5'- gCCUGC-GGGCCAuCGGCGuccucgCGGUCc -3'
miRNA:   3'- gGGGCGaCCUGGU-GCUGUuga---GCCAG- -5'
20081 5' -57.4 NC_004687.1 + 132156 0.66 0.882196
Target:  5'- -aCCGCaGGACCuuGACGGCcugggccaGGUCg -3'
miRNA:   3'- ggGGCGaCCUGGugCUGUUGag------CCAG- -5'
20081 5' -57.4 NC_004687.1 + 18302 0.66 0.882196
Target:  5'- aCCCGCUGGGugaggUCugGAUGG-UCGGUg -3'
miRNA:   3'- gGGGCGACCU-----GGugCUGUUgAGCCAg -5'
20081 5' -57.4 NC_004687.1 + 107689 0.66 0.882196
Target:  5'- gCCCgGCguccGGCCACGugGcccGCUggcCGGUCg -3'
miRNA:   3'- -GGGgCGac--CUGGUGCugU---UGA---GCCAG- -5'
20081 5' -57.4 NC_004687.1 + 105906 0.66 0.882196
Target:  5'- uCCCCGCacaagaggugcGGACCuuCGACGAa--GGUCu -3'
miRNA:   3'- -GGGGCGa----------CCUGGu-GCUGUUgagCCAG- -5'
20081 5' -57.4 NC_004687.1 + 144836 0.66 0.882196
Target:  5'- -gCCGaucGGGCCACGACG-CgUGGUCg -3'
miRNA:   3'- ggGGCga-CCUGGUGCUGUuGaGCCAG- -5'
20081 5' -57.4 NC_004687.1 + 18838 0.66 0.882196
Target:  5'- aUCgCGCUGGGCgagCAUGucgaagauCAACUCGGUUc -3'
miRNA:   3'- -GGgGCGACCUG---GUGCu-------GUUGAGCCAG- -5'
20081 5' -57.4 NC_004687.1 + 66380 0.66 0.875238
Target:  5'- gCCCCaGC-GGAUCGCGACGucgUCGG-Cg -3'
miRNA:   3'- -GGGG-CGaCCUGGUGCUGUug-AGCCaG- -5'
20081 5' -57.4 NC_004687.1 + 132393 0.66 0.875238
Target:  5'- gUCgGCUGGACCACGG-----UGGUCg -3'
miRNA:   3'- gGGgCGACCUGGUGCUguugaGCCAG- -5'
20081 5' -57.4 NC_004687.1 + 82071 0.66 0.875238
Target:  5'- -gCUGCUGGACCGCcGCGACguccUGGg- -3'
miRNA:   3'- ggGGCGACCUGGUGcUGUUGa---GCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.