miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20091 5' -55.3 NC_004687.1 + 32010 0.66 0.936565
Target:  5'- aCGGCaGCUUCGAGGacuucgucGCGcauGCCGGGa- -3'
miRNA:   3'- -GCCGcUGAAGUUCUa-------CGC---UGGCCCaa -5'
20091 5' -55.3 NC_004687.1 + 98450 0.66 0.931546
Target:  5'- cCGGCGuCUUCAAGAaGUGGUCGGa-- -3'
miRNA:   3'- -GCCGCuGAAGUUCUaCGCUGGCCcaa -5'
20091 5' -55.3 NC_004687.1 + 118461 0.66 0.926286
Target:  5'- aCGaCGACUUCGAGcccgGUGACCGGu-- -3'
miRNA:   3'- -GCcGCUGAAGUUCua--CGCUGGCCcaa -5'
20091 5' -55.3 NC_004687.1 + 133783 0.66 0.926286
Target:  5'- uCGGCGGggucacCaUCAAGcgcuggGUGACCGGGUg -3'
miRNA:   3'- -GCCGCU------GaAGUUCua----CGCUGGCCCAa -5'
20091 5' -55.3 NC_004687.1 + 3300 0.66 0.926286
Target:  5'- cCGGUGACaUCGAGcacgaugGCGAUCGGcGUc -3'
miRNA:   3'- -GCCGCUGaAGUUCua-----CGCUGGCC-CAa -5'
20091 5' -55.3 NC_004687.1 + 121301 0.66 0.926286
Target:  5'- cCGGCuACccgUUCcGGAUGCGcgaguACCGGGUg -3'
miRNA:   3'- -GCCGcUG---AAGuUCUACGC-----UGGCCCAa -5'
20091 5' -55.3 NC_004687.1 + 83792 0.66 0.925746
Target:  5'- uCGGCGACcaaccggUUCA---UGCGGCUGGGc- -3'
miRNA:   3'- -GCCGCUG-------AAGUucuACGCUGGCCCaa -5'
20091 5' -55.3 NC_004687.1 + 60631 0.66 0.920783
Target:  5'- gGGCGGCgUCAAGGUGgcCG-UCGGGg- -3'
miRNA:   3'- gCCGCUGaAGUUCUAC--GCuGGCCCaa -5'
20091 5' -55.3 NC_004687.1 + 144499 0.66 0.920783
Target:  5'- aCGGCGACUUCg----GCGAgauCUGGGg- -3'
miRNA:   3'- -GCCGCUGAAGuucuaCGCU---GGCCCaa -5'
20091 5' -55.3 NC_004687.1 + 98101 0.66 0.920783
Target:  5'- aGGCaguuGACcgUCAAgcagguccucauGAUGCGAUCGGGUc -3'
miRNA:   3'- gCCG----CUGa-AGUU------------CUACGCUGGCCCAa -5'
20091 5' -55.3 NC_004687.1 + 6844 0.66 0.920783
Target:  5'- aGGCGAUggcCAGGGUgaGCGaccaGCCGGGg- -3'
miRNA:   3'- gCCGCUGaa-GUUCUA--CGC----UGGCCCaa -5'
20091 5' -55.3 NC_004687.1 + 74459 0.66 0.909054
Target:  5'- uCGGCGcCgugCAGGGcgGUGACUGGGg- -3'
miRNA:   3'- -GCCGCuGaa-GUUCUa-CGCUGGCCCaa -5'
20091 5' -55.3 NC_004687.1 + 112432 0.66 0.906593
Target:  5'- gGuGCGGCUgauguagGCGACCGGGUc -3'
miRNA:   3'- gC-CGCUGAaguucuaCGCUGGCCCAa -5'
20091 5' -55.3 NC_004687.1 + 143447 0.67 0.90283
Target:  5'- uCGGCGAUcaCGAGGUcGCGAaagUCGGGg- -3'
miRNA:   3'- -GCCGCUGaaGUUCUA-CGCU---GGCCCaa -5'
20091 5' -55.3 NC_004687.1 + 101781 0.67 0.90283
Target:  5'- gCGGCGAUgucguuggCGAGAacugcaGCGcuGCCGGGUUg -3'
miRNA:   3'- -GCCGCUGaa------GUUCUa-----CGC--UGGCCCAA- -5'
20091 5' -55.3 NC_004687.1 + 146494 0.67 0.889676
Target:  5'- aCGGUGGCgUCg----GUGACCGGGUa -3'
miRNA:   3'- -GCCGCUGaAGuucuaCGCUGGCCCAa -5'
20091 5' -55.3 NC_004687.1 + 83859 0.67 0.889676
Target:  5'- -cGCGACgUCGGGAUGCuGCgGGGg- -3'
miRNA:   3'- gcCGCUGaAGUUCUACGcUGgCCCaa -5'
20091 5' -55.3 NC_004687.1 + 10467 0.67 0.889676
Target:  5'- cCGGCGACUaCAccGGcaGCGACCaGGGa- -3'
miRNA:   3'- -GCCGCUGAaGU--UCuaCGCUGG-CCCaa -5'
20091 5' -55.3 NC_004687.1 + 19068 0.67 0.882753
Target:  5'- aCGGCGGCUUCc---UGCccacgGACUGGGUg -3'
miRNA:   3'- -GCCGCUGAAGuucuACG-----CUGGCCCAa -5'
20091 5' -55.3 NC_004687.1 + 116468 0.67 0.880632
Target:  5'- cCGGCGACccCAAGcccaagcccugccuGUGCGGCCcGGGc- -3'
miRNA:   3'- -GCCGCUGaaGUUC--------------UACGCUGG-CCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.