miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20092 5' -54.5 NC_004687.1 + 92098 0.66 0.962948
Target:  5'- -uCGACCGCGUCCgcgccgaucaggagcGUcGCCGCuccGGGGc -3'
miRNA:   3'- acGCUGGUGCAGGa--------------CA-UGGUGu--UCCC- -5'
20092 5' -54.5 NC_004687.1 + 93672 0.66 0.962607
Target:  5'- gGCGACCGCcagaUCgGUGCCcacCGGGGGa -3'
miRNA:   3'- aCGCUGGUGca--GGaCAUGGu--GUUCCC- -5'
20092 5' -54.5 NC_004687.1 + 149116 0.66 0.962607
Target:  5'- cUGCGGgCGC-UCaCcGUGCCGCGAGGc -3'
miRNA:   3'- -ACGCUgGUGcAG-GaCAUGGUGUUCCc -5'
20092 5' -54.5 NC_004687.1 + 43700 0.66 0.962607
Target:  5'- gGCGACCACGgcaCCUaugagGUgaugAUCGcCAAGGGc -3'
miRNA:   3'- aCGCUGGUGCa--GGA-----CA----UGGU-GUUCCC- -5'
20092 5' -54.5 NC_004687.1 + 60802 0.66 0.962607
Target:  5'- cGCGGCCAa---CUGggacACCGCcGGGGa -3'
miRNA:   3'- aCGCUGGUgcagGACa---UGGUGuUCCC- -5'
20092 5' -54.5 NC_004687.1 + 70537 0.66 0.962607
Target:  5'- cGCGACCACG-CCgaUGCCG-AAGGc -3'
miRNA:   3'- aCGCUGGUGCaGGacAUGGUgUUCCc -5'
20092 5' -54.5 NC_004687.1 + 19332 0.66 0.962607
Target:  5'- gGUGACCGgGUCCaGcGCCACAAc-- -3'
miRNA:   3'- aCGCUGGUgCAGGaCaUGGUGUUccc -5'
20092 5' -54.5 NC_004687.1 + 126833 0.66 0.962264
Target:  5'- cGUGACCAUGuggaaguUCgUGccGCCACGAGGc -3'
miRNA:   3'- aCGCUGGUGC-------AGgACa-UGGUGUUCCc -5'
20092 5' -54.5 NC_004687.1 + 36731 0.66 0.959076
Target:  5'- gGUGACCAUGUCCUugGCCAuCAucacGGc -3'
miRNA:   3'- aCGCUGGUGCAGGAcaUGGU-GUu---CCc -5'
20092 5' -54.5 NC_004687.1 + 15569 0.66 0.959076
Target:  5'- cGCGACCACGagCCcGaggcgaccUGCCACAGGc- -3'
miRNA:   3'- aCGCUGGUGCa-GGaC--------AUGGUGUUCcc -5'
20092 5' -54.5 NC_004687.1 + 83416 0.66 0.959076
Target:  5'- gGUGACCgccgACGUCaaGUACgccuggaACAGGGGa -3'
miRNA:   3'- aCGCUGG----UGCAGgaCAUGg------UGUUCCC- -5'
20092 5' -54.5 NC_004687.1 + 133854 0.66 0.959076
Target:  5'- aGCacACCGCcaCCUGUGCuCACAAcGGGu -3'
miRNA:   3'- aCGc-UGGUGcaGGACAUG-GUGUU-CCC- -5'
20092 5' -54.5 NC_004687.1 + 142655 0.66 0.957228
Target:  5'- gGuCGGCCACGUCaugCUGggccucgcggaugGCCGCAgccuucgAGGGg -3'
miRNA:   3'- aC-GCUGGUGCAG---GACa------------UGGUGU-------UCCC- -5'
20092 5' -54.5 NC_004687.1 + 77474 0.66 0.955323
Target:  5'- cGCcGCCGCcUCCUGUGCgGCGuAGcGGc -3'
miRNA:   3'- aCGcUGGUGcAGGACAUGgUGU-UC-CC- -5'
20092 5' -54.5 NC_004687.1 + 98411 0.66 0.955323
Target:  5'- gUGCGACCAU-UCCgcaGCCcgagguCAAGGGg -3'
miRNA:   3'- -ACGCUGGUGcAGGacaUGGu-----GUUCCC- -5'
20092 5' -54.5 NC_004687.1 + 13283 0.66 0.954935
Target:  5'- cGUGGCCgaccuggaggccaACGUCCUGgAUCACAuccugcGGGc -3'
miRNA:   3'- aCGCUGG-------------UGCAGGACaUGGUGUu-----CCC- -5'
20092 5' -54.5 NC_004687.1 + 112089 0.66 0.947132
Target:  5'- -aCGugCGCGcggUCCUGgACCACuacGGGGu -3'
miRNA:   3'- acGCugGUGC---AGGACaUGGUGu--UCCC- -5'
20092 5' -54.5 NC_004687.1 + 119393 0.66 0.942688
Target:  5'- cUGCGGCCAgGUgCCcc-ACC-CAGGGGc -3'
miRNA:   3'- -ACGCUGGUgCA-GGacaUGGuGUUCCC- -5'
20092 5' -54.5 NC_004687.1 + 64737 0.66 0.942688
Target:  5'- uUGaCGGCauaguCGUCCaccGCCACGAGGGc -3'
miRNA:   3'- -AC-GCUGgu---GCAGGacaUGGUGUUCCC- -5'
20092 5' -54.5 NC_004687.1 + 27816 0.66 0.942688
Target:  5'- gGCGGCUugGgcgCCUcUGCCGgAGGcGGg -3'
miRNA:   3'- aCGCUGGugCa--GGAcAUGGUgUUC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.