Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
201 | 3' | -59.4 | AC_000007.1 | + | 23022 | 1.07 | 0.000273 |
Target: 5'- aCAGGCCGCGUCAUGCACGCAGCACCUu -3' miRNA: 3'- -GUCCGGCGCAGUACGUGCGUCGUGGA- -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 6575 | 0.66 | 0.347387 |
Target: 5'- gCAGGCgCGCGUCGaaguagucuaucuUGCAuccuUGCaagucuAGCGCCUg -3' miRNA: 3'- -GUCCG-GCGCAGU-------------ACGU----GCG------UCGUGGA- -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 17116 | 0.67 | 0.315491 |
Target: 5'- gAGGuCCGCGugcggccaaUCAaGCAgGUGGCACCg -3' miRNA: 3'- gUCC-GGCGC---------AGUaCGUgCGUCGUGGa -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 5266 | 0.67 | 0.315491 |
Target: 5'- aCGGGCCaGgGUCAUGUcuuuccacggGCGCAGgGuCCUc -3' miRNA: 3'- -GUCCGG-CgCAGUACG----------UGCGUCgU-GGA- -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 17746 | 0.7 | 0.176495 |
Target: 5'- aCGGGCggcaUGCGUCGUGCGCaccaccggcgGCGGCGCg- -3' miRNA: 3'- -GUCCG----GCGCAGUACGUG----------CGUCGUGga -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 22722 | 0.7 | 0.176495 |
Target: 5'- uCAGcGCCGgGUgGUGCACGCuggccAGCACgCUc -3' miRNA: 3'- -GUC-CGGCgCAgUACGUGCG-----UCGUG-GA- -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 12662 | 0.72 | 0.133487 |
Target: 5'- gAGGCCGUGgcgCAgcgugagcGCGCGCAGCAgCa -3' miRNA: 3'- gUCCGGCGCa--GUa-------CGUGCGUCGUgGa -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 23838 | 0.78 | 0.046825 |
Target: 5'- -uGGCCGCGggcuggGUGUGCGCGGCACCa -3' miRNA: 3'- guCCGGCGCag----UACGUGCGUCGUGGa -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 8743 | 0.72 | 0.142834 |
Target: 5'- --cGCCGCGUCgucgcGUucgccagcaaccuccGCGCGCAGCACCa -3' miRNA: 3'- gucCGGCGCAG-----UA---------------CGUGCGUCGUGGa -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 16043 | 0.72 | 0.145263 |
Target: 5'- -cGGCCGCGuUUGUGCGCGCcccagGGCGCg- -3' miRNA: 3'- guCCGGCGC-AGUACGUGCG-----UCGUGga -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 8790 | 0.7 | 0.202335 |
Target: 5'- cCGGGCC-CGUCGUcuuCACGCAgagGCGCCa -3' miRNA: 3'- -GUCCGGcGCAGUAc--GUGCGU---CGUGGa -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 11094 | 0.69 | 0.207882 |
Target: 5'- gGGGgCGCaUC-UGC-CGCAGCACCg -3' miRNA: 3'- gUCCgGCGcAGuACGuGCGUCGUGGa -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 18688 | 0.68 | 0.2639 |
Target: 5'- aCGGGCCGCaUCGaucgcggaccGCugGCGGCACg- -3' miRNA: 3'- -GUCCGGCGcAGUa---------CGugCGUCGUGga -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 28527 | 0.68 | 0.277904 |
Target: 5'- uCAGGCUGUaggUGUGgGCGCAGCaACCg -3' miRNA: 3'- -GUCCGGCGca-GUACgUGCGUCG-UGGa -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 25088 | 0.68 | 0.277904 |
Target: 5'- gCAGGCucgCGCGUCucaagccaGCGCGCcAGCugCUc -3' miRNA: 3'- -GUCCG---GCGCAGua------CGUGCG-UCGugGA- -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 17322 | 0.68 | 0.277904 |
Target: 5'- -cGGCCGCc---UGCAcCGCGGCAUCUg -3' miRNA: 3'- guCCGGCGcaguACGU-GCGUCGUGGA- -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 17654 | 0.67 | 0.300011 |
Target: 5'- gGGGUgguagCGCG-C-UGUugGCAGCACCa -3' miRNA: 3'- gUCCG-----GCGCaGuACGugCGUCGUGGa -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 12194 | 0.67 | 0.30306 |
Target: 5'- cCAGGgCGCGUCGgcuuggggcccagcGCAgGuCAGCGCCc -3' miRNA: 3'- -GUCCgGCGCAGUa-------------CGUgC-GUCGUGGa -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 16453 | 0.66 | 0.355928 |
Target: 5'- gCAGGCCGCuaaccgaGUCGcGCACcCAGUACa- -3' miRNA: 3'- -GUCCGGCG-------CAGUaCGUGcGUCGUGga -5' |
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201 | 3' | -59.4 | AC_000007.1 | + | 17043 | 0.72 | 0.141236 |
Target: 5'- uUAGGCCGCGcUUuucuucggacgGUGCAagcguggGCAGCACCUg -3' miRNA: 3'- -GUCCGGCGC-AG-----------UACGUg------CGUCGUGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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