miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2011 3' -59.5 NC_001347.2 + 6866 0.66 0.84973
Target:  5'- uGCAGC-CGCCgAGCCCGucgacGuuGCcgAAGu -3'
miRNA:   3'- -UGUCGuGCGG-UCGGGCu----CggCGa-UUC- -5'
2011 3' -59.5 NC_001347.2 + 86263 0.66 0.848967
Target:  5'- uCGGCGCGCgaAGCUucggcggCGuGCCGCUGAc -3'
miRNA:   3'- uGUCGUGCGg-UCGG-------GCuCGGCGAUUc -5'
2011 3' -59.5 NC_001347.2 + 69614 0.66 0.842017
Target:  5'- cGCAGCAUGCCGuCCCaGuccGCCGCc--- -3'
miRNA:   3'- -UGUCGUGCGGUcGGG-Cu--CGGCGauuc -5'
2011 3' -59.5 NC_001347.2 + 191143 0.66 0.842017
Target:  5'- aGCAGCgucGCGCCAuGCCgCGuGaCGCUGAc -3'
miRNA:   3'- -UGUCG---UGCGGU-CGG-GCuCgGCGAUUc -5'
2011 3' -59.5 NC_001347.2 + 184946 0.66 0.842017
Target:  5'- uGCAGCuCGUCGGCCggcgUGGGCgGCUcgcgGAGa -3'
miRNA:   3'- -UGUCGuGCGGUCGG----GCUCGgCGA----UUC- -5'
2011 3' -59.5 NC_001347.2 + 189867 0.66 0.841236
Target:  5'- gUAGCGCGCCgggucgccuguccGGCagcagCCGGGCCGCc--- -3'
miRNA:   3'- uGUCGUGCGG-------------UCG-----GGCUCGGCGauuc -5'
2011 3' -59.5 NC_001347.2 + 125811 0.66 0.826068
Target:  5'- aGCAGCuCGCacaGGCgCUGGGCCaGCUGc- -3'
miRNA:   3'- -UGUCGuGCGg--UCG-GGCUCGG-CGAUuc -5'
2011 3' -59.5 NC_001347.2 + 2517 0.66 0.826068
Target:  5'- gGCAGUugGCUuuuuugcuacGUCCGGGUCGCggcGAGg -3'
miRNA:   3'- -UGUCGugCGGu---------CGGGCUCGGCGa--UUC- -5'
2011 3' -59.5 NC_001347.2 + 180360 0.66 0.826068
Target:  5'- uACGGCugcauCGCCA-UCCGAGCCGggGAc -3'
miRNA:   3'- -UGUCGu----GCGGUcGGGCUCGGCgaUUc -5'
2011 3' -59.5 NC_001347.2 + 185127 0.66 0.826068
Target:  5'- uGCGGCGCGagCAGCcgCCGGGCgGCa--- -3'
miRNA:   3'- -UGUCGUGCg-GUCG--GGCUCGgCGauuc -5'
2011 3' -59.5 NC_001347.2 + 193083 0.66 0.826068
Target:  5'- cCGGCAUGuCCGGCCgucgcaaGGGCUGCUcGGc -3'
miRNA:   3'- uGUCGUGC-GGUCGGg------CUCGGCGAuUC- -5'
2011 3' -59.5 NC_001347.2 + 85960 0.66 0.817845
Target:  5'- cCGGCGCGCgaacccgugUAGUgCGAGCCGCc--- -3'
miRNA:   3'- uGUCGUGCG---------GUCGgGCUCGGCGauuc -5'
2011 3' -59.5 NC_001347.2 + 169170 0.66 0.817845
Target:  5'- uGCuGCAcCGCC-GCCuCGAGaCGCUGGGc -3'
miRNA:   3'- -UGuCGU-GCGGuCGG-GCUCgGCGAUUC- -5'
2011 3' -59.5 NC_001347.2 + 188634 0.66 0.817845
Target:  5'- gACAGCGCGUgGGaCgUGAGgCCGCUcacgGAGa -3'
miRNA:   3'- -UGUCGUGCGgUC-GgGCUC-GGCGA----UUC- -5'
2011 3' -59.5 NC_001347.2 + 38734 0.66 0.817845
Target:  5'- cGCAGCAaCGUCuGUCgGAGCgccgGCUGAGg -3'
miRNA:   3'- -UGUCGU-GCGGuCGGgCUCGg---CGAUUC- -5'
2011 3' -59.5 NC_001347.2 + 1905 0.66 0.817845
Target:  5'- uGCGGCugGCUGGCgCUGGGCgcggUGCUGc- -3'
miRNA:   3'- -UGUCGugCGGUCG-GGCUCG----GCGAUuc -5'
2011 3' -59.5 NC_001347.2 + 157602 0.66 0.809466
Target:  5'- uGCGGCucuaCCcGCCCGAGCgGCUGc- -3'
miRNA:   3'- -UGUCGugc-GGuCGGGCUCGgCGAUuc -5'
2011 3' -59.5 NC_001347.2 + 168147 0.66 0.809466
Target:  5'- aGCGuGCAgGcCCAGUagaUGAGCCGCUGGu -3'
miRNA:   3'- -UGU-CGUgC-GGUCGg--GCUCGGCGAUUc -5'
2011 3' -59.5 NC_001347.2 + 180423 0.66 0.808619
Target:  5'- uGCGGCACccggcugcacgugGCCuGGCCCGAacGCUGCUu-- -3'
miRNA:   3'- -UGUCGUG-------------CGG-UCGGGCU--CGGCGAuuc -5'
2011 3' -59.5 NC_001347.2 + 123984 0.67 0.804366
Target:  5'- -uGGaCGCGCaauucguuugcauGCCCGAGCUGCUGGa -3'
miRNA:   3'- ugUC-GUGCGgu-----------CGGGCUCGGCGAUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.