miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2011 3' -59.5 NC_001347.2 + 192248 0.78 0.219561
Target:  5'- uCGGCcuCGCCGGCCCGAGCgCGCcGGGg -3'
miRNA:   3'- uGUCGu-GCGGUCGGGCUCG-GCGaUUC- -5'
2011 3' -59.5 NC_001347.2 + 112109 0.76 0.294081
Target:  5'- gGCGGCaacuggcguucaccACGCCGGCCUGAGCgCGCUcAGc -3'
miRNA:   3'- -UGUCG--------------UGCGGUCGGGCUCG-GCGAuUC- -5'
2011 3' -59.5 NC_001347.2 + 193885 0.76 0.309519
Target:  5'- uACA-CGCGCgAGCCCGucauGCCGCUGGGc -3'
miRNA:   3'- -UGUcGUGCGgUCGGGCu---CGGCGAUUC- -5'
2011 3' -59.5 NC_001347.2 + 79859 0.75 0.330572
Target:  5'- gACGGUugGCCcgugGGCCUGGGCCuGCUAGa -3'
miRNA:   3'- -UGUCGugCGG----UCGGGCUCGG-CGAUUc -5'
2011 3' -59.5 NC_001347.2 + 25390 0.74 0.383704
Target:  5'- gGCAGCugGCCGGCuuGA-CCGCg--- -3'
miRNA:   3'- -UGUCGugCGGUCGggCUcGGCGauuc -5'
2011 3' -59.5 NC_001347.2 + 201534 0.73 0.441333
Target:  5'- cACAGCGucugGCCAGCuaccucugcugccCCGAGCCGCUGc- -3'
miRNA:   3'- -UGUCGUg---CGGUCG-------------GGCUCGGCGAUuc -5'
2011 3' -59.5 NC_001347.2 + 128562 0.73 0.450968
Target:  5'- cACAGCuacgcgcucuGgGCCAGCCUcugGAGCCGCUGu- -3'
miRNA:   3'- -UGUCG----------UgCGGUCGGG---CUCGGCGAUuc -5'
2011 3' -59.5 NC_001347.2 + 153844 0.72 0.46608
Target:  5'- cACAGCGCGCCAcguccucgugugccGCgCCGAGCgGCg--- -3'
miRNA:   3'- -UGUCGUGCGGU--------------CG-GGCUCGgCGauuc -5'
2011 3' -59.5 NC_001347.2 + 125316 0.72 0.477812
Target:  5'- cGCAGcCGCGCCGGCCuCGAGCauguaCGCg--- -3'
miRNA:   3'- -UGUC-GUGCGGUCGG-GCUCG-----GCGauuc -5'
2011 3' -59.5 NC_001347.2 + 142905 0.72 0.496139
Target:  5'- gACAuuCGCGUCGgcGCCCGGGCCGcCUGAGg -3'
miRNA:   3'- -UGUc-GUGCGGU--CGGGCUCGGC-GAUUC- -5'
2011 3' -59.5 NC_001347.2 + 229364 0.72 0.499843
Target:  5'- gGCAGCGCGCCgaaacaccgucccgaAGCCCGGuGCCGaCa--- -3'
miRNA:   3'- -UGUCGUGCGG---------------UCGGGCU-CGGC-Gauuc -5'
2011 3' -59.5 NC_001347.2 + 37954 0.72 0.514777
Target:  5'- uGCAGCGCGucCCAGCgCG-GCCGCUc-- -3'
miRNA:   3'- -UGUCGUGC--GGUCGgGCuCGGCGAuuc -5'
2011 3' -59.5 NC_001347.2 + 92983 0.71 0.543244
Target:  5'- uACAGCACGCaCAcCUCGGGCUGC-GAGa -3'
miRNA:   3'- -UGUCGUGCG-GUcGGGCUCGGCGaUUC- -5'
2011 3' -59.5 NC_001347.2 + 195636 0.71 0.552851
Target:  5'- gGCuguGCGCGCCGGCCUGuuguGUCGCa--- -3'
miRNA:   3'- -UGu--CGUGCGGUCGGGCu---CGGCGauuc -5'
2011 3' -59.5 NC_001347.2 + 126744 0.71 0.552851
Target:  5'- -uGGC-CGCCGGCuuuccaCCGAGCUGCUGGa -3'
miRNA:   3'- ugUCGuGCGGUCG------GGCUCGGCGAUUc -5'
2011 3' -59.5 NC_001347.2 + 31394 0.71 0.572209
Target:  5'- gGCGGUggcuGCGCCuccucgucGGCCUGGGCUGCUGu- -3'
miRNA:   3'- -UGUCG----UGCGG--------UCGGGCUCGGCGAUuc -5'
2011 3' -59.5 NC_001347.2 + 79059 0.7 0.58195
Target:  5'- -aGGCGCGUCGGCgCCaaauGAGCCGCgAAGc -3'
miRNA:   3'- ugUCGUGCGGUCG-GG----CUCGGCGaUUC- -5'
2011 3' -59.5 NC_001347.2 + 193670 0.7 0.591724
Target:  5'- --cGCGCGCCuccGCUCGcGGCCGCUAc- -3'
miRNA:   3'- uguCGUGCGGu--CGGGC-UCGGCGAUuc -5'
2011 3' -59.5 NC_001347.2 + 78757 0.7 0.591724
Target:  5'- cGCAGUucguGC-CCGGCaCCGAGUCGCUGGa -3'
miRNA:   3'- -UGUCG----UGcGGUCG-GGCUCGGCGAUUc -5'
2011 3' -59.5 NC_001347.2 + 113440 0.7 0.611348
Target:  5'- cGCAGCGCuGCCacugugcacguAGCCCGucacggucGGCCGCcgUGAGg -3'
miRNA:   3'- -UGUCGUG-CGG-----------UCGGGC--------UCGGCG--AUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.