miRNA display CGI


Results 21 - 40 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2011 3' -59.5 NC_001347.2 + 88660 0.67 0.804366
Target:  5'- cGCAGCuucgcgcauccacugGCGCCGGCgCGccCUGCUGGGa -3'
miRNA:   3'- -UGUCG---------------UGCGGUCGgGCucGGCGAUUC- -5'
2011 3' -59.5 NC_001347.2 + 109835 0.67 0.800938
Target:  5'- cCGGCaagACGCCuuGCCCGGGCCauGCa--- -3'
miRNA:   3'- uGUCG---UGCGGu-CGGGCUCGG--CGauuc -5'
2011 3' -59.5 NC_001347.2 + 101999 0.67 0.792269
Target:  5'- cCGGgGCGCaCAGCUUaacGCCGCUGAGc -3'
miRNA:   3'- uGUCgUGCG-GUCGGGcu-CGGCGAUUC- -5'
2011 3' -59.5 NC_001347.2 + 9837 0.67 0.792269
Target:  5'- cACGGCACGCUGGCUaggGAGuuGUgaucUAGGa -3'
miRNA:   3'- -UGUCGUGCGGUCGGg--CUCggCG----AUUC- -5'
2011 3' -59.5 NC_001347.2 + 13133 0.67 0.792269
Target:  5'- aACAGCcCGCUacgGGCCCGuGCgGCg--- -3'
miRNA:   3'- -UGUCGuGCGG---UCGGGCuCGgCGauuc -5'
2011 3' -59.5 NC_001347.2 + 63118 0.67 0.791394
Target:  5'- cGCGGC-CGCCGcuguggccggaguGCCCGucGCCGCa--- -3'
miRNA:   3'- -UGUCGuGCGGU-------------CGGGCu-CGGCGauuc -5'
2011 3' -59.5 NC_001347.2 + 81571 0.67 0.783465
Target:  5'- gGCGGCAacaGCCAGCgaCGAucGCCGCc--- -3'
miRNA:   3'- -UGUCGUg--CGGUCGg-GCU--CGGCGauuc -5'
2011 3' -59.5 NC_001347.2 + 170108 0.67 0.783465
Target:  5'- gACGGCACGCC-GUCUGugcuGUCGUUGAc -3'
miRNA:   3'- -UGUCGUGCGGuCGGGCu---CGGCGAUUc -5'
2011 3' -59.5 NC_001347.2 + 91106 0.67 0.783465
Target:  5'- -aGGaaaGCCAGCgCGAGCUGCUGu- -3'
miRNA:   3'- ugUCgugCGGUCGgGCUCGGCGAUuc -5'
2011 3' -59.5 NC_001347.2 + 85334 0.67 0.783465
Target:  5'- uCAGCGCcgccGCCAGCgCCGucgcccGCgGCUAGGc -3'
miRNA:   3'- uGUCGUG----CGGUCG-GGCu-----CGgCGAUUC- -5'
2011 3' -59.5 NC_001347.2 + 186609 0.67 0.774537
Target:  5'- -aGGcCACGCCGGCCgGcacagccacuGGuuGCUGAGu -3'
miRNA:   3'- ugUC-GUGCGGUCGGgC----------UCggCGAUUC- -5'
2011 3' -59.5 NC_001347.2 + 39798 0.67 0.774537
Target:  5'- cACAGC-CGCCu-CCCGGGCgCGCa--- -3'
miRNA:   3'- -UGUCGuGCGGucGGGCUCG-GCGauuc -5'
2011 3' -59.5 NC_001347.2 + 136176 0.67 0.774537
Target:  5'- cGCAGCACgGCCGGaaCCCu-GCCGCg--- -3'
miRNA:   3'- -UGUCGUG-CGGUC--GGGcuCGGCGauuc -5'
2011 3' -59.5 NC_001347.2 + 81684 0.67 0.774537
Target:  5'- -gGGCACGCCgAGCgaGAGCgCGC-AGGg -3'
miRNA:   3'- ugUCGUGCGG-UCGggCUCG-GCGaUUC- -5'
2011 3' -59.5 NC_001347.2 + 170069 0.67 0.773637
Target:  5'- gGCGGCGuCGUCAGuuggcguCCCGAGUCGCc--- -3'
miRNA:   3'- -UGUCGU-GCGGUC-------GGGCUCGGCGauuc -5'
2011 3' -59.5 NC_001347.2 + 93205 0.67 0.76549
Target:  5'- -gAGCgcucGCGCUGGCgaCGAGCuCGCUGAGc -3'
miRNA:   3'- ugUCG----UGCGGUCGg-GCUCG-GCGAUUC- -5'
2011 3' -59.5 NC_001347.2 + 113615 0.67 0.76549
Target:  5'- cGCGGCcuccacgucgucgcaGCGCCGGCuggagagcgagaggCCGGcguagcuGCCGCUGAGa -3'
miRNA:   3'- -UGUCG---------------UGCGGUCG--------------GGCU-------CGGCGAUUC- -5'
2011 3' -59.5 NC_001347.2 + 183467 0.67 0.756334
Target:  5'- gAUAGCGCGCCucGGCCuCGGGagaCGCg--- -3'
miRNA:   3'- -UGUCGUGCGG--UCGG-GCUCg--GCGauuc -5'
2011 3' -59.5 NC_001347.2 + 39144 0.67 0.756334
Target:  5'- gGCAGCA-GCguGCCCGcGUCGCg--- -3'
miRNA:   3'- -UGUCGUgCGguCGGGCuCGGCGauuc -5'
2011 3' -59.5 NC_001347.2 + 13513 0.68 0.747077
Target:  5'- gGguGCucaccCGCCgggcGGCCCGGGCCGCcgugcugGAGg -3'
miRNA:   3'- -UguCGu----GCGG----UCGGGCUCGGCGa------UUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.