miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2011 3' -59.5 NC_001347.2 + 1905 0.66 0.817845
Target:  5'- uGCGGCugGCUGGCgCUGGGCgcggUGCUGc- -3'
miRNA:   3'- -UGUCGugCGGUCG-GGCUCG----GCGAUuc -5'
2011 3' -59.5 NC_001347.2 + 2478 0.68 0.737725
Target:  5'- uGCAcccGCGCGCCGcgcugugggcGCgCGAGCCGCa--- -3'
miRNA:   3'- -UGU---CGUGCGGU----------CGgGCUCGGCGauuc -5'
2011 3' -59.5 NC_001347.2 + 2517 0.66 0.826068
Target:  5'- gGCAGUugGCUuuuuugcuacGUCCGGGUCGCggcGAGg -3'
miRNA:   3'- -UGUCGugCGGu---------CGGGCUCGGCGa--UUC- -5'
2011 3' -59.5 NC_001347.2 + 6866 0.66 0.84973
Target:  5'- uGCAGC-CGCCgAGCCCGucgacGuuGCcgAAGu -3'
miRNA:   3'- -UGUCGuGCGG-UCGGGCu----CggCGa-UUC- -5'
2011 3' -59.5 NC_001347.2 + 7907 0.68 0.699553
Target:  5'- gGCGGCGacaagGCC-GCCUGAGCCGgUAGc -3'
miRNA:   3'- -UGUCGUg----CGGuCGGGCUCGGCgAUUc -5'
2011 3' -59.5 NC_001347.2 + 9837 0.67 0.792269
Target:  5'- cACGGCACGCUGGCUaggGAGuuGUgaucUAGGa -3'
miRNA:   3'- -UGUCGUGCGGUCGGg--CUCggCG----AUUC- -5'
2011 3' -59.5 NC_001347.2 + 12004 0.68 0.747077
Target:  5'- gGCAGCGCgGCUgucaccgacgGGCCCGAaacGCC-CUGGGg -3'
miRNA:   3'- -UGUCGUG-CGG----------UCGGGCU---CGGcGAUUC- -5'
2011 3' -59.5 NC_001347.2 + 13133 0.67 0.792269
Target:  5'- aACAGCcCGCUacgGGCCCGuGCgGCg--- -3'
miRNA:   3'- -UGUCGuGCGG---UCGGGCuCGgCGauuc -5'
2011 3' -59.5 NC_001347.2 + 13513 0.68 0.747077
Target:  5'- gGguGCucaccCGCCgggcGGCCCGGGCCGCcgugcugGAGg -3'
miRNA:   3'- -UguCGu----GCGG----UCGGGCUCGGCGa------UUC- -5'
2011 3' -59.5 NC_001347.2 + 25390 0.74 0.383704
Target:  5'- gGCAGCugGCCGGCuuGA-CCGCg--- -3'
miRNA:   3'- -UGUCGugCGGUCGggCUcGGCGauuc -5'
2011 3' -59.5 NC_001347.2 + 31394 0.71 0.572209
Target:  5'- gGCGGUggcuGCGCCuccucgucGGCCUGGGCUGCUGu- -3'
miRNA:   3'- -UGUCG----UGCGG--------UCGGGCUCGGCGAUuc -5'
2011 3' -59.5 NC_001347.2 + 37954 0.72 0.514777
Target:  5'- uGCAGCGCGucCCAGCgCG-GCCGCUc-- -3'
miRNA:   3'- -UGUCGUGC--GGUCGgGCuCGGCGAuuc -5'
2011 3' -59.5 NC_001347.2 + 38494 0.7 0.621185
Target:  5'- gGCAGCaccgcgcccaGCGCCAGCC--AGCCGCa--- -3'
miRNA:   3'- -UGUCG----------UGCGGUCGGgcUCGGCGauuc -5'
2011 3' -59.5 NC_001347.2 + 38734 0.66 0.817845
Target:  5'- cGCAGCAaCGUCuGUCgGAGCgccgGCUGAGg -3'
miRNA:   3'- -UGUCGU-GCGGuCGGgCUCGg---CGAUUC- -5'
2011 3' -59.5 NC_001347.2 + 39144 0.67 0.756334
Target:  5'- gGCAGCA-GCguGCCCGcGUCGCg--- -3'
miRNA:   3'- -UGUCGUgCGguCGGGCuCGGCGauuc -5'
2011 3' -59.5 NC_001347.2 + 39798 0.67 0.774537
Target:  5'- cACAGC-CGCCu-CCCGGGCgCGCa--- -3'
miRNA:   3'- -UGUCGuGCGGucGGGCUCG-GCGauuc -5'
2011 3' -59.5 NC_001347.2 + 63118 0.67 0.791394
Target:  5'- cGCGGC-CGCCGcuguggccggaguGCCCGucGCCGCa--- -3'
miRNA:   3'- -UGUCGuGCGGU-------------CGGGCu-CGGCGauuc -5'
2011 3' -59.5 NC_001347.2 + 63231 0.68 0.728289
Target:  5'- cGCuGUuuACGCCGGCCUccgcGGCCGCUGc- -3'
miRNA:   3'- -UGuCG--UGCGGUCGGGc---UCGGCGAUuc -5'
2011 3' -59.5 NC_001347.2 + 65876 0.68 0.737725
Target:  5'- uCGGCACGCUGGCgggCCGAccGCCGCc--- -3'
miRNA:   3'- uGUCGUGCGGUCG---GGCU--CGGCGauuc -5'
2011 3' -59.5 NC_001347.2 + 69614 0.66 0.842017
Target:  5'- cGCAGCAUGCCGuCCCaGuccGCCGCc--- -3'
miRNA:   3'- -UGUCGUGCGGUcGGG-Cu--CGGCGauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.