miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2011 5' -57.6 NC_001347.2 + 78908 0.66 0.915264
Target:  5'- aCCCUGCCcuaucuguGUCaCAuccuggcGCUGGGCACGCu- -3'
miRNA:   3'- gGGGACGG--------CGG-GU-------UGACUUGUGCGua -5'
2011 5' -57.6 NC_001347.2 + 63293 0.66 0.904136
Target:  5'- aCCUacauuuUGCCGgCCGACUGucgguACGCGCc- -3'
miRNA:   3'- gGGG------ACGGCgGGUUGACu----UGUGCGua -5'
2011 5' -57.6 NC_001347.2 + 136613 0.66 0.904136
Target:  5'- gCCCUGacaaccaaaaacUCGcCCCGACUGcGCAUGCGc -3'
miRNA:   3'- gGGGAC------------GGC-GGGUUGACuUGUGCGUa -5'
2011 5' -57.6 NC_001347.2 + 208089 0.66 0.904136
Target:  5'- aCCgCUGCCGCagaugggcgcaCCGACggcgGAGC-CGCGUc -3'
miRNA:   3'- -GGgGACGGCG-----------GGUUGa---CUUGuGCGUA- -5'
2011 5' -57.6 NC_001347.2 + 210879 0.66 0.904136
Target:  5'- gCCUguccGCCGCgCCAGCUG-GCACGgAg -3'
miRNA:   3'- gGGGa---CGGCG-GGUUGACuUGUGCgUa -5'
2011 5' -57.6 NC_001347.2 + 124156 0.66 0.891564
Target:  5'- -gCC-GCCGCCCAAC-GAACAC-CGUu -3'
miRNA:   3'- ggGGaCGGCGGGUUGaCUUGUGcGUA- -5'
2011 5' -57.6 NC_001347.2 + 136191 0.67 0.887624
Target:  5'- aCCCUGCCG-CgGACUGcgccggggggcggcgGGCACGCc- -3'
miRNA:   3'- gGGGACGGCgGgUUGAC---------------UUGUGCGua -5'
2011 5' -57.6 NC_001347.2 + 103123 0.67 0.884955
Target:  5'- -aCCUGCCGCgUAACaugGAAgGCGUAc -3'
miRNA:   3'- ggGGACGGCGgGUUGa--CUUgUGCGUa -5'
2011 5' -57.6 NC_001347.2 + 90833 0.67 0.878135
Target:  5'- gCCgCUGCCGCCUAACcuccGCuCGCAc -3'
miRNA:   3'- -GGgGACGGCGGGUUGacu-UGuGCGUa -5'
2011 5' -57.6 NC_001347.2 + 92819 0.67 0.878135
Target:  5'- gCUCUUGCCGaCCAGCUuccACAUGCAUu -3'
miRNA:   3'- -GGGGACGGCgGGUUGAcu-UGUGCGUA- -5'
2011 5' -57.6 NC_001347.2 + 41625 0.67 0.863882
Target:  5'- uCCCCgaaacuacGCCGUCCAACUu--CACGCc- -3'
miRNA:   3'- -GGGGa-------CGGCGGGUUGAcuuGUGCGua -5'
2011 5' -57.6 NC_001347.2 + 143806 0.67 0.863882
Target:  5'- aUCCCgaaucaggGCCGCUC-GCUGAACAaGCGg -3'
miRNA:   3'- -GGGGa-------CGGCGGGuUGACUUGUgCGUa -5'
2011 5' -57.6 NC_001347.2 + 214404 0.68 0.841041
Target:  5'- cUCCCUGUgGCCCA----GACACGUAg -3'
miRNA:   3'- -GGGGACGgCGGGUugacUUGUGCGUa -5'
2011 5' -57.6 NC_001347.2 + 66773 0.68 0.833062
Target:  5'- aCCCCgacGuCCGCCCGACggUGGugGCgGCGg -3'
miRNA:   3'- -GGGGa--C-GGCGGGUUG--ACUugUG-CGUa -5'
2011 5' -57.6 NC_001347.2 + 34148 0.68 0.824911
Target:  5'- cCCCCUGCaCGUCCAugUcgcGACACGa-- -3'
miRNA:   3'- -GGGGACG-GCGGGUugAc--UUGUGCgua -5'
2011 5' -57.6 NC_001347.2 + 107822 0.68 0.816595
Target:  5'- -aCCUGCUGCCCA--UGcGACugGCGUc -3'
miRNA:   3'- ggGGACGGCGGGUugAC-UUGugCGUA- -5'
2011 5' -57.6 NC_001347.2 + 13533 0.68 0.799497
Target:  5'- gCCCggGCCGCCguGCUGGAgggccgcccCACGCc- -3'
miRNA:   3'- gGGGa-CGGCGGguUGACUU---------GUGCGua -5'
2011 5' -57.6 NC_001347.2 + 139408 0.69 0.790731
Target:  5'- cUCUUUGCCGgUCAGCUGAuucCAUGCGUg -3'
miRNA:   3'- -GGGGACGGCgGGUUGACUu--GUGCGUA- -5'
2011 5' -57.6 NC_001347.2 + 80494 0.69 0.772802
Target:  5'- gCCCUGCUcgGCCCAcACgccguggaaGGGCGCGCAg -3'
miRNA:   3'- gGGGACGG--CGGGU-UGa--------CUUGUGCGUa -5'
2011 5' -57.6 NC_001347.2 + 81679 0.69 0.772802
Target:  5'- uCCUCggGCaCGCCgAGCgaGAGCGCGCAg -3'
miRNA:   3'- -GGGGa-CG-GCGGgUUGa-CUUGUGCGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.