Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2011 | 5' | -57.6 | NC_001347.2 | + | 68191 | 0.77 | 0.363584 |
Target: 5'- gCCgCUGCCaCCCAGCgaGGACACGCAg -3' miRNA: 3'- -GGgGACGGcGGGUUGa-CUUGUGCGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 65512 | 0.77 | 0.363584 |
Target: 5'- gCCggaCUGCCGCCCgAGCUGAagcagACGCGCGUc -3' miRNA: 3'- -GGg--GACGGCGGG-UUGACU-----UGUGCGUA- -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 170383 | 0.73 | 0.5203 |
Target: 5'- --gCUGCCGUCCGACagGAACGCGCu- -3' miRNA: 3'- gggGACGGCGGGUUGa-CUUGUGCGua -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 155704 | 0.73 | 0.5203 |
Target: 5'- uCUgUUGCUGCCCucuCUGGACGCGCGc -3' miRNA: 3'- -GGgGACGGCGGGuu-GACUUGUGCGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 128050 | 0.71 | 0.667542 |
Target: 5'- aCCCgcuaggcuuugUGCgCGCCCAACUGGAUcuGCGUAa -3' miRNA: 3'- gGGG-----------ACG-GCGGGUUGACUUG--UGCGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 2419 | 0.71 | 0.67741 |
Target: 5'- --gCUGCUGCCCgAGCUGGAC-CGCGa -3' miRNA: 3'- gggGACGGCGGG-UUGACUUGuGCGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 195858 | 0.71 | 0.687242 |
Target: 5'- gCCCUUGCCGCCCGAUcc-GCA-GCAUu -3' miRNA: 3'- -GGGGACGGCGGGUUGacuUGUgCGUA- -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 91646 | 0.7 | 0.726059 |
Target: 5'- uCCgCUGCCGCCaCAcCUucGCGCGCGa -3' miRNA: 3'- -GGgGACGGCGG-GUuGAcuUGUGCGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 39631 | 0.69 | 0.745044 |
Target: 5'- gCCUUcGUCGCCCGugUGccgcgggcGACACGCAg -3' miRNA: 3'- gGGGA-CGGCGGGUugAC--------UUGUGCGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 69625 | 0.69 | 0.745044 |
Target: 5'- gUCCCaguccGCCGCCCAACU--GCGCGUc- -3' miRNA: 3'- -GGGGa----CGGCGGGUUGAcuUGUGCGua -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 200218 | 0.69 | 0.754401 |
Target: 5'- cCCCCggGCuCGCCC-ACUGAcucgGCGCGUc- -3' miRNA: 3'- -GGGGa-CG-GCGGGuUGACU----UGUGCGua -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 108554 | 0.69 | 0.763657 |
Target: 5'- gCgCUGCCGCUCAagauGCUGAACAUccccaGCAUc -3' miRNA: 3'- gGgGACGGCGGGU----UGACUUGUG-----CGUA- -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 178384 | 0.69 | 0.763657 |
Target: 5'- uUCCUGgCGCCCAGC--AugGCGCAg -3' miRNA: 3'- gGGGACgGCGGGUUGacUugUGCGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 80494 | 0.69 | 0.772802 |
Target: 5'- gCCCUGCUcgGCCCAcACgccguggaaGGGCGCGCAg -3' miRNA: 3'- gGGGACGG--CGGGU-UGa--------CUUGUGCGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 81679 | 0.69 | 0.772802 |
Target: 5'- uCCUCggGCaCGCCgAGCgaGAGCGCGCAg -3' miRNA: 3'- -GGGGa-CG-GCGGgUUGa-CUUGUGCGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 139408 | 0.69 | 0.790731 |
Target: 5'- cUCUUUGCCGgUCAGCUGAuucCAUGCGUg -3' miRNA: 3'- -GGGGACGGCgGGUUGACUu--GUGCGUA- -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 13533 | 0.68 | 0.799497 |
Target: 5'- gCCCggGCCGCCguGCUGGAgggccgcccCACGCc- -3' miRNA: 3'- gGGGa-CGGCGGguUGACUU---------GUGCGua -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 107822 | 0.68 | 0.816595 |
Target: 5'- -aCCUGCUGCCCA--UGcGACugGCGUc -3' miRNA: 3'- ggGGACGGCGGGUugAC-UUGugCGUA- -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 34148 | 0.68 | 0.824911 |
Target: 5'- cCCCCUGCaCGUCCAugUcgcGACACGa-- -3' miRNA: 3'- -GGGGACG-GCGGGUugAc--UUGUGCgua -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 66773 | 0.68 | 0.833062 |
Target: 5'- aCCCCgacGuCCGCCCGACggUGGugGCgGCGg -3' miRNA: 3'- -GGGGa--C-GGCGGGUUG--ACUugUG-CGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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