miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2011 5' -57.6 NC_001347.2 + 178384 0.69 0.763657
Target:  5'- uUCCUGgCGCCCAGC--AugGCGCAg -3'
miRNA:   3'- gGGGACgGCGGGUUGacUugUGCGUa -5'
2011 5' -57.6 NC_001347.2 + 108554 0.69 0.763657
Target:  5'- gCgCUGCCGCUCAagauGCUGAACAUccccaGCAUc -3'
miRNA:   3'- gGgGACGGCGGGU----UGACUUGUG-----CGUA- -5'
2011 5' -57.6 NC_001347.2 + 200218 0.69 0.754401
Target:  5'- cCCCCggGCuCGCCC-ACUGAcucgGCGCGUc- -3'
miRNA:   3'- -GGGGa-CG-GCGGGuUGACU----UGUGCGua -5'
2011 5' -57.6 NC_001347.2 + 69625 0.69 0.745044
Target:  5'- gUCCCaguccGCCGCCCAACU--GCGCGUc- -3'
miRNA:   3'- -GGGGa----CGGCGGGUUGAcuUGUGCGua -5'
2011 5' -57.6 NC_001347.2 + 39631 0.69 0.745044
Target:  5'- gCCUUcGUCGCCCGugUGccgcgggcGACACGCAg -3'
miRNA:   3'- gGGGA-CGGCGGGUugAC--------UUGUGCGUa -5'
2011 5' -57.6 NC_001347.2 + 91646 0.7 0.726059
Target:  5'- uCCgCUGCCGCCaCAcCUucGCGCGCGa -3'
miRNA:   3'- -GGgGACGGCGG-GUuGAcuUGUGCGUa -5'
2011 5' -57.6 NC_001347.2 + 195858 0.71 0.687242
Target:  5'- gCCCUUGCCGCCCGAUcc-GCA-GCAUu -3'
miRNA:   3'- -GGGGACGGCGGGUUGacuUGUgCGUA- -5'
2011 5' -57.6 NC_001347.2 + 2419 0.71 0.67741
Target:  5'- --gCUGCUGCCCgAGCUGGAC-CGCGa -3'
miRNA:   3'- gggGACGGCGGG-UUGACUUGuGCGUa -5'
2011 5' -57.6 NC_001347.2 + 128050 0.71 0.667542
Target:  5'- aCCCgcuaggcuuugUGCgCGCCCAACUGGAUcuGCGUAa -3'
miRNA:   3'- gGGG-----------ACG-GCGGGUUGACUUG--UGCGUa -5'
2011 5' -57.6 NC_001347.2 + 170383 0.73 0.5203
Target:  5'- --gCUGCCGUCCGACagGAACGCGCu- -3'
miRNA:   3'- gggGACGGCGGGUUGa-CUUGUGCGua -5'
2011 5' -57.6 NC_001347.2 + 155704 0.73 0.5203
Target:  5'- uCUgUUGCUGCCCucuCUGGACGCGCGc -3'
miRNA:   3'- -GGgGACGGCGGGuu-GACUUGUGCGUa -5'
2011 5' -57.6 NC_001347.2 + 68191 0.77 0.363584
Target:  5'- gCCgCUGCCaCCCAGCgaGGACACGCAg -3'
miRNA:   3'- -GGgGACGGcGGGUUGa-CUUGUGCGUa -5'
2011 5' -57.6 NC_001347.2 + 65512 0.77 0.363584
Target:  5'- gCCggaCUGCCGCCCgAGCUGAagcagACGCGCGUc -3'
miRNA:   3'- -GGg--GACGGCGGG-UUGACU-----UGUGCGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.