Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2011 | 5' | -57.6 | NC_001347.2 | + | 2419 | 0.71 | 0.67741 |
Target: 5'- --gCUGCUGCCCgAGCUGGAC-CGCGa -3' miRNA: 3'- gggGACGGCGGG-UUGACUUGuGCGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 13533 | 0.68 | 0.799497 |
Target: 5'- gCCCggGCCGCCguGCUGGAgggccgcccCACGCc- -3' miRNA: 3'- gGGGa-CGGCGGguUGACUU---------GUGCGua -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 34148 | 0.68 | 0.824911 |
Target: 5'- cCCCCUGCaCGUCCAugUcgcGACACGa-- -3' miRNA: 3'- -GGGGACG-GCGGGUugAc--UUGUGCgua -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 39631 | 0.69 | 0.745044 |
Target: 5'- gCCUUcGUCGCCCGugUGccgcgggcGACACGCAg -3' miRNA: 3'- gGGGA-CGGCGGGUugAC--------UUGUGCGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 41625 | 0.67 | 0.863882 |
Target: 5'- uCCCCgaaacuacGCCGUCCAACUu--CACGCc- -3' miRNA: 3'- -GGGGa-------CGGCGGGUUGAcuuGUGCGua -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 63293 | 0.66 | 0.904136 |
Target: 5'- aCCUacauuuUGCCGgCCGACUGucgguACGCGCc- -3' miRNA: 3'- gGGG------ACGGCgGGUUGACu----UGUGCGua -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 65512 | 0.77 | 0.363584 |
Target: 5'- gCCggaCUGCCGCCCgAGCUGAagcagACGCGCGUc -3' miRNA: 3'- -GGg--GACGGCGGG-UUGACU-----UGUGCGUA- -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 66773 | 0.68 | 0.833062 |
Target: 5'- aCCCCgacGuCCGCCCGACggUGGugGCgGCGg -3' miRNA: 3'- -GGGGa--C-GGCGGGUUG--ACUugUG-CGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 68191 | 0.77 | 0.363584 |
Target: 5'- gCCgCUGCCaCCCAGCgaGGACACGCAg -3' miRNA: 3'- -GGgGACGGcGGGUUGa-CUUGUGCGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 69625 | 0.69 | 0.745044 |
Target: 5'- gUCCCaguccGCCGCCCAACU--GCGCGUc- -3' miRNA: 3'- -GGGGa----CGGCGGGUUGAcuUGUGCGua -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 78908 | 0.66 | 0.915264 |
Target: 5'- aCCCUGCCcuaucuguGUCaCAuccuggcGCUGGGCACGCu- -3' miRNA: 3'- gGGGACGG--------CGG-GU-------UGACUUGUGCGua -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 80494 | 0.69 | 0.772802 |
Target: 5'- gCCCUGCUcgGCCCAcACgccguggaaGGGCGCGCAg -3' miRNA: 3'- gGGGACGG--CGGGU-UGa--------CUUGUGCGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 81679 | 0.69 | 0.772802 |
Target: 5'- uCCUCggGCaCGCCgAGCgaGAGCGCGCAg -3' miRNA: 3'- -GGGGa-CG-GCGGgUUGa-CUUGUGCGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 90833 | 0.67 | 0.878135 |
Target: 5'- gCCgCUGCCGCCUAACcuccGCuCGCAc -3' miRNA: 3'- -GGgGACGGCGGGUUGacu-UGuGCGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 91646 | 0.7 | 0.726059 |
Target: 5'- uCCgCUGCCGCCaCAcCUucGCGCGCGa -3' miRNA: 3'- -GGgGACGGCGG-GUuGAcuUGUGCGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 92819 | 0.67 | 0.878135 |
Target: 5'- gCUCUUGCCGaCCAGCUuccACAUGCAUu -3' miRNA: 3'- -GGGGACGGCgGGUUGAcu-UGUGCGUA- -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 103123 | 0.67 | 0.884955 |
Target: 5'- -aCCUGCCGCgUAACaugGAAgGCGUAc -3' miRNA: 3'- ggGGACGGCGgGUUGa--CUUgUGCGUa -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 107822 | 0.68 | 0.816595 |
Target: 5'- -aCCUGCUGCCCA--UGcGACugGCGUc -3' miRNA: 3'- ggGGACGGCGGGUugAC-UUGugCGUA- -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 108554 | 0.69 | 0.763657 |
Target: 5'- gCgCUGCCGCUCAagauGCUGAACAUccccaGCAUc -3' miRNA: 3'- gGgGACGGCGGGU----UGACUUGUG-----CGUA- -5' |
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2011 | 5' | -57.6 | NC_001347.2 | + | 124156 | 0.66 | 0.891564 |
Target: 5'- -gCC-GCCGCCCAAC-GAACAC-CGUu -3' miRNA: 3'- ggGGaCGGCGGGUUGaCUUGUGcGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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