miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20137 3' -50.7 NC_004687.1 + 36551 0.66 0.996518
Target:  5'- aUCCaGCAcCAGCGCGAaccgCUCGgGcuggGCc -3'
miRNA:   3'- -AGGaUGUuGUUGCGCUa---GAGCgCa---CG- -5'
20137 3' -50.7 NC_004687.1 + 35803 0.66 0.996518
Target:  5'- gUCUugAGCAcCGCGAgggUCUCGCugacgaucGUGUu -3'
miRNA:   3'- aGGAugUUGUuGCGCU---AGAGCG--------CACG- -5'
20137 3' -50.7 NC_004687.1 + 99223 0.66 0.996518
Target:  5'- gUCCUGC-GCGACGuCGAg--CGUGUcGCc -3'
miRNA:   3'- -AGGAUGuUGUUGC-GCUagaGCGCA-CG- -5'
20137 3' -50.7 NC_004687.1 + 82299 0.66 0.996518
Target:  5'- aCCUGguGCAACGCGGUucccagCUgGCG-GUc -3'
miRNA:   3'- aGGAUguUGUUGCGCUA------GAgCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 109616 0.66 0.995915
Target:  5'- cCCUGCAGCAuccgcuGCGCGAg--CGCauugacgGCg -3'
miRNA:   3'- aGGAUGUUGU------UGCGCUagaGCGca-----CG- -5'
20137 3' -50.7 NC_004687.1 + 41420 0.66 0.995915
Target:  5'- aCCUGCAAC-GCGCGGUCacUGa-UGCa -3'
miRNA:   3'- aGGAUGUUGuUGCGCUAGa-GCgcACG- -5'
20137 3' -50.7 NC_004687.1 + 137525 0.66 0.995915
Target:  5'- cCCaACAACAACGCGAcacuggUCg-GCGgGCc -3'
miRNA:   3'- aGGaUGUUGUUGCGCU------AGagCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 3398 0.66 0.995915
Target:  5'- cUCUACuACAACGUGAUgaccgccaUCGCG-GCc -3'
miRNA:   3'- aGGAUGuUGUUGCGCUAg-------AGCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 148199 0.66 0.995915
Target:  5'- gUCUgGCcGC-ACGUGAUCaUCGaCGUGCu -3'
miRNA:   3'- -AGGaUGuUGuUGCGCUAG-AGC-GCACG- -5'
20137 3' -50.7 NC_004687.1 + 144081 0.66 0.995229
Target:  5'- uUCCcGC-ACGACGCGGUCggcaGCGacGCc -3'
miRNA:   3'- -AGGaUGuUGUUGCGCUAGag--CGCa-CG- -5'
20137 3' -50.7 NC_004687.1 + 76158 0.66 0.995229
Target:  5'- cUCCgGCAugAAgGUGGUCUCGaucugaGUGg -3'
miRNA:   3'- -AGGaUGUugUUgCGCUAGAGCg-----CACg -5'
20137 3' -50.7 NC_004687.1 + 85998 0.66 0.995229
Target:  5'- uUCUUGgcCAGC-GCGCGGUUcaUCGCGgGCa -3'
miRNA:   3'- -AGGAU--GUUGuUGCGCUAG--AGCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 10672 0.66 0.995229
Target:  5'- cUUCUGCAGCAcCaUGAg--CGCGUGCu -3'
miRNA:   3'- -AGGAUGUUGUuGcGCUagaGCGCACG- -5'
20137 3' -50.7 NC_004687.1 + 6047 0.66 0.995006
Target:  5'- cUCCUcguagcgcuuguggGCGucgGCGACgGCGAUCUgGCGgGCc -3'
miRNA:   3'- -AGGA--------------UGU---UGUUG-CGCUAGAgCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 140016 0.66 0.994453
Target:  5'- uUCCaGCAGCu-CGCGAacCUCGCGaaccuugGCg -3'
miRNA:   3'- -AGGaUGUUGuuGCGCUa-GAGCGCa------CG- -5'
20137 3' -50.7 NC_004687.1 + 119531 0.66 0.994453
Target:  5'- gUCCuUGCGGac-CGgGAUCUCGCGgGUg -3'
miRNA:   3'- -AGG-AUGUUguuGCgCUAGAGCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 94130 0.66 0.994453
Target:  5'- cCCgaggACAACGACGUGAUggcCGCGUugauGCc -3'
miRNA:   3'- aGGa---UGUUGUUGCGCUAga-GCGCA----CG- -5'
20137 3' -50.7 NC_004687.1 + 54622 0.66 0.99437
Target:  5'- gUCUgcgaGCAACGGCGCcagCUCGCcgaggcgGUGCa -3'
miRNA:   3'- -AGGa---UGUUGUUGCGcuaGAGCG-------CACG- -5'
20137 3' -50.7 NC_004687.1 + 8901 0.66 0.994286
Target:  5'- gCCUACcGCAACGCacacaaggCGCuGUGCa -3'
miRNA:   3'- aGGAUGuUGUUGCGcuaga---GCG-CACG- -5'
20137 3' -50.7 NC_004687.1 + 12783 0.66 0.994201
Target:  5'- aCCUgGCAGCGugGCGAggacaagcuguucgUCUCGaucgGCg -3'
miRNA:   3'- aGGA-UGUUGUugCGCU--------------AGAGCgca-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.