miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20137 3' -50.7 NC_004687.1 + 60388 1.12 0.00659
Target:  5'- cUCCUACAACAACGCGAUCUCGCGUGCc -3'
miRNA:   3'- -AGGAUGUUGUUGCGCUAGAGCGCACG- -5'
20137 3' -50.7 NC_004687.1 + 137089 0.92 0.112138
Target:  5'- gUCCgaGCGACAGCGCGAUCUCGCG-GCu -3'
miRNA:   3'- -AGGa-UGUUGUUGCGCUAGAGCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 28389 0.81 0.474476
Target:  5'- cUCUACGACGAcguCGCGAUCUCGUGcGCc -3'
miRNA:   3'- aGGAUGUUGUU---GCGCUAGAGCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 80849 0.76 0.731669
Target:  5'- gCCUGaGACcagucGCGCGAUCUCGCcUGCg -3'
miRNA:   3'- aGGAUgUUGu----UGCGCUAGAGCGcACG- -5'
20137 3' -50.7 NC_004687.1 + 109877 0.76 0.731669
Target:  5'- aCCUGCAACAgGCGCGGgaccuacaUCGCGcGCg -3'
miRNA:   3'- aGGAUGUUGU-UGCGCUag------AGCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 32704 0.75 0.780819
Target:  5'- aCCUGCGcCGGgGUGAUCUCGacacCGUGCu -3'
miRNA:   3'- aGGAUGUuGUUgCGCUAGAGC----GCACG- -5'
20137 3' -50.7 NC_004687.1 + 31497 0.75 0.780819
Target:  5'- -gCUGCAGCAGCGaGAcCUCGCG-GCg -3'
miRNA:   3'- agGAUGUUGUUGCgCUaGAGCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 113947 0.75 0.780819
Target:  5'- gCCUGCAugAugGUGAUCcCGCGUu- -3'
miRNA:   3'- aGGAUGUugUugCGCUAGaGCGCAcg -5'
20137 3' -50.7 NC_004687.1 + 130044 0.74 0.817664
Target:  5'- -aCUGCAGCAGCGaGAUCU-GCGUGg -3'
miRNA:   3'- agGAUGUUGUUGCgCUAGAgCGCACg -5'
20137 3' -50.7 NC_004687.1 + 116695 0.72 0.874982
Target:  5'- ---gACAACAACGUGGUCUCGaucgGCa -3'
miRNA:   3'- aggaUGUUGUUGCGCUAGAGCgca-CG- -5'
20137 3' -50.7 NC_004687.1 + 67512 0.72 0.882303
Target:  5'- aCCUACcgggugcCGACcgGCGAUCUCGCGcGCc -3'
miRNA:   3'- aGGAUGuu-----GUUG--CGCUAGAGCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 98357 0.72 0.88939
Target:  5'- gCCaGCGcggGCAGCGCGugcggagagaacAUCUgCGCGUGCg -3'
miRNA:   3'- aGGaUGU---UGUUGCGC------------UAGA-GCGCACG- -5'
20137 3' -50.7 NC_004687.1 + 25860 0.72 0.900886
Target:  5'- -gCUACGACAgguccugggucaccACGCaGAUCUCGC-UGCu -3'
miRNA:   3'- agGAUGUUGU--------------UGCG-CUAGAGCGcACG- -5'
20137 3' -50.7 NC_004687.1 + 121695 0.72 0.902842
Target:  5'- aUCUGCGACGACGCGAUCUaccuccacUGUGa -3'
miRNA:   3'- aGGAUGUUGUUGCGCUAGAgc------GCACg -5'
20137 3' -50.7 NC_004687.1 + 75416 0.72 0.902842
Target:  5'- gCCgaagaaggACAACAuGCGCGAcgaguUCgCGCGUGCg -3'
miRNA:   3'- aGGa-------UGUUGU-UGCGCU-----AGaGCGCACG- -5'
20137 3' -50.7 NC_004687.1 + 8516 0.71 0.909199
Target:  5'- cCUUGCAGacgauCGAgGCGAUCUCGCG-GUc -3'
miRNA:   3'- aGGAUGUU-----GUUgCGCUAGAGCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 25461 0.71 0.909199
Target:  5'- aCCUGCGGCAGCGCGGcCagCGCa-GCa -3'
miRNA:   3'- aGGAUGUUGUUGCGCUaGa-GCGcaCG- -5'
20137 3' -50.7 NC_004687.1 + 104320 0.71 0.909199
Target:  5'- gCCUGCG--AugGUGAUCUCGUugggcaGUGCg -3'
miRNA:   3'- aGGAUGUugUugCGCUAGAGCG------CACG- -5'
20137 3' -50.7 NC_004687.1 + 43940 0.71 0.909199
Target:  5'- cUCCUGCcACAGgGUcacccgguaGGUCUCGCGgcagGCg -3'
miRNA:   3'- -AGGAUGuUGUUgCG---------CUAGAGCGCa---CG- -5'
20137 3' -50.7 NC_004687.1 + 37980 0.71 0.921163
Target:  5'- gUCCggcgGCAGCAcCGCGcgCUUGCGcugacgGCa -3'
miRNA:   3'- -AGGa---UGUUGUuGCGCuaGAGCGCa-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.