miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20137 3' -50.7 NC_004687.1 + 131597 0.66 0.99394
Target:  5'- gUUCUGCAccagcucgcgcccguGCAcCGCGAUCU-GCGggGCg -3'
miRNA:   3'- -AGGAUGU---------------UGUuGCGCUAGAgCGCa-CG- -5'
20137 3' -50.7 NC_004687.1 + 23298 0.66 0.993578
Target:  5'- gCCUACGA--GCGCGAgCUCGCu--- -3'
miRNA:   3'- aGGAUGUUguUGCGCUaGAGCGcacg -5'
20137 3' -50.7 NC_004687.1 + 89542 0.66 0.993578
Target:  5'- gCCgACGACGuCGCGAUC-CGCugggGCg -3'
miRNA:   3'- aGGaUGUUGUuGCGCUAGaGCGca--CG- -5'
20137 3' -50.7 NC_004687.1 + 18824 0.66 0.993578
Target:  5'- aCCgGCAGCu-CGCGAUCgCGCuggGCg -3'
miRNA:   3'- aGGaUGUUGuuGCGCUAGaGCGca-CG- -5'
20137 3' -50.7 NC_004687.1 + 7864 0.66 0.993578
Target:  5'- gUCCUGCGggaACAGCG-GAUCgCGCcaGCu -3'
miRNA:   3'- -AGGAUGU---UGUUGCgCUAGaGCGcaCG- -5'
20137 3' -50.7 NC_004687.1 + 148043 0.66 0.993578
Target:  5'- uUCCUGCcGCcgagcuGGCGCGAUC-CGC-UGUu -3'
miRNA:   3'- -AGGAUGuUG------UUGCGCUAGaGCGcACG- -5'
20137 3' -50.7 NC_004687.1 + 25480 0.66 0.993578
Target:  5'- gCCUGCAuGCGGCgGCGAUCg-GCGUc- -3'
miRNA:   3'- aGGAUGU-UGUUG-CGCUAGagCGCAcg -5'
20137 3' -50.7 NC_004687.1 + 155486 0.67 0.992595
Target:  5'- cCCUAUAGCGACGag--CUCGUG-GUa -3'
miRNA:   3'- aGGAUGUUGUUGCgcuaGAGCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 15861 0.67 0.992595
Target:  5'- gCCUACAACcacaucGGCGUGAUCguggCGCccaaGCg -3'
miRNA:   3'- aGGAUGUUG------UUGCGCUAGa---GCGca--CG- -5'
20137 3' -50.7 NC_004687.1 + 52707 0.67 0.992595
Target:  5'- uUCCUgACGGCGucaGCGAagUCGCGgucgaggGCg -3'
miRNA:   3'- -AGGA-UGUUGUug-CGCUagAGCGCa------CG- -5'
20137 3' -50.7 NC_004687.1 + 1898 0.67 0.992595
Target:  5'- gUCgCUGCAguGCGACGUGAUacgGCGUGa -3'
miRNA:   3'- -AG-GAUGU--UGUUGCGCUAgagCGCACg -5'
20137 3' -50.7 NC_004687.1 + 55791 0.67 0.992491
Target:  5'- aUCCU-CGACGagaccccgcuGCGCGAaccgcgcUCagGCGUGCc -3'
miRNA:   3'- -AGGAuGUUGU----------UGCGCU-------AGagCGCACG- -5'
20137 3' -50.7 NC_004687.1 + 147012 0.67 0.991496
Target:  5'- gUCCgUGC-ACAGCGC---CUUGUGUGCg -3'
miRNA:   3'- -AGG-AUGuUGUUGCGcuaGAGCGCACG- -5'
20137 3' -50.7 NC_004687.1 + 48482 0.67 0.991496
Target:  5'- cCCUAC-GCAGCGCG-UCguugaGCG-GCg -3'
miRNA:   3'- aGGAUGuUGUUGCGCuAGag---CGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 101555 0.67 0.99138
Target:  5'- gUCCUGC-GCGGCcugggacucccggGCGGUCUgGCcgGUGCc -3'
miRNA:   3'- -AGGAUGuUGUUG-------------CGCUAGAgCG--CACG- -5'
20137 3' -50.7 NC_004687.1 + 99872 0.67 0.991143
Target:  5'- gCCUcuguagcucaacggACAgaGCAACGCGGUCcuaaCGCGgugGCu -3'
miRNA:   3'- aGGA--------------UGU--UGUUGCGCUAGa---GCGCa--CG- -5'
20137 3' -50.7 NC_004687.1 + 36595 0.67 0.990272
Target:  5'- -gCUGCAugGccagcagggagaGCGUGGUCUUGCcgGUGCc -3'
miRNA:   3'- agGAUGUugU------------UGCGCUAGAGCG--CACG- -5'
20137 3' -50.7 NC_004687.1 + 120202 0.67 0.990143
Target:  5'- gUCCUGCAcCAugccguuGC-CGAUCUCGC-UGUa -3'
miRNA:   3'- -AGGAUGUuGU-------UGcGCUAGAGCGcACG- -5'
20137 3' -50.7 NC_004687.1 + 25131 0.67 0.988914
Target:  5'- gCCUGCAGCGccucaaagGCGcCGAcgaUCGCGgGCa -3'
miRNA:   3'- aGGAUGUUGU--------UGC-GCUag-AGCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 63810 0.67 0.987413
Target:  5'- cCCggaGCGGCGACGCuccuGAUCggCGCGgacGCg -3'
miRNA:   3'- aGGa--UGUUGUUGCG----CUAGa-GCGCa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.