miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20137 3' -50.7 NC_004687.1 + 1898 0.67 0.992595
Target:  5'- gUCgCUGCAguGCGACGUGAUacgGCGUGa -3'
miRNA:   3'- -AG-GAUGU--UGUUGCGCUAgagCGCACg -5'
20137 3' -50.7 NC_004687.1 + 3398 0.66 0.995915
Target:  5'- cUCUACuACAACGUGAUgaccgccaUCGCG-GCc -3'
miRNA:   3'- aGGAUGuUGUUGCGCUAg-------AGCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 5710 0.69 0.964002
Target:  5'- aCCUcGCGAucgaggaaguuCAGCGUGAcccgcucccacaucuUCUUGCGUGCg -3'
miRNA:   3'- aGGA-UGUU-----------GUUGCGCU---------------AGAGCGCACG- -5'
20137 3' -50.7 NC_004687.1 + 6047 0.66 0.995006
Target:  5'- cUCCUcguagcgcuuguggGCGucgGCGACgGCGAUCUgGCGgGCc -3'
miRNA:   3'- -AGGA--------------UGU---UGUUG-CGCUAGAgCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 6789 0.68 0.977448
Target:  5'- uUCgCUGCggUAACGCugcCUCGCG-GCa -3'
miRNA:   3'- -AG-GAUGuuGUUGCGcuaGAGCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 7864 0.66 0.993578
Target:  5'- gUCCUGCGggaACAGCG-GAUCgCGCcaGCu -3'
miRNA:   3'- -AGGAUGU---UGUUGCgCUAGaGCGcaCG- -5'
20137 3' -50.7 NC_004687.1 + 8516 0.71 0.909199
Target:  5'- cCUUGCAGacgauCGAgGCGAUCUCGCG-GUc -3'
miRNA:   3'- aGGAUGUU-----GUUgCGCUAGAGCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 8901 0.66 0.994286
Target:  5'- gCCUACcGCAACGCacacaaggCGCuGUGCa -3'
miRNA:   3'- aGGAUGuUGUUGCGcuaga---GCG-CACG- -5'
20137 3' -50.7 NC_004687.1 + 9215 0.68 0.981961
Target:  5'- aCCgccGCAcCGAUGUGGUagUUCGUGUGCg -3'
miRNA:   3'- aGGa--UGUuGUUGCGCUA--GAGCGCACG- -5'
20137 3' -50.7 NC_004687.1 + 9853 0.69 0.969193
Target:  5'- aUCCU-CGACcuggcGCGCGGUCUCgGCGUc- -3'
miRNA:   3'- -AGGAuGUUGu----UGCGCUAGAG-CGCAcg -5'
20137 3' -50.7 NC_004687.1 + 10672 0.66 0.995229
Target:  5'- cUUCUGCAGCAcCaUGAg--CGCGUGCu -3'
miRNA:   3'- -AGGAUGUUGUuGcGCUagaGCGCACG- -5'
20137 3' -50.7 NC_004687.1 + 12783 0.66 0.994201
Target:  5'- aCCUgGCAGCGugGCGAggacaagcuguucgUCUCGaucgGCg -3'
miRNA:   3'- aGGA-UGUUGUugCGCU--------------AGAGCgca-CG- -5'
20137 3' -50.7 NC_004687.1 + 15102 0.69 0.969193
Target:  5'- gUCUACGGCGACGCGG--UCGCcaagGCc -3'
miRNA:   3'- aGGAUGUUGUUGCGCUagAGCGca--CG- -5'
20137 3' -50.7 NC_004687.1 + 15861 0.67 0.992595
Target:  5'- gCCUACAACcacaucGGCGUGAUCguggCGCccaaGCg -3'
miRNA:   3'- aGGAUGUUG------UUGCGCUAGa---GCGca--CG- -5'
20137 3' -50.7 NC_004687.1 + 18824 0.66 0.993578
Target:  5'- aCCgGCAGCu-CGCGAUCgCGCuggGCg -3'
miRNA:   3'- aGGaUGUUGuuGCGCUAGaGCGca-CG- -5'
20137 3' -50.7 NC_004687.1 + 18862 0.69 0.966016
Target:  5'- aCCUACuACGGCGUGAUgggUGCGcGCa -3'
miRNA:   3'- aGGAUGuUGUUGCGCUAga-GCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 22003 0.71 0.937216
Target:  5'- --gUGCGACAGCGCGGUCcCGCcgccGCg -3'
miRNA:   3'- aggAUGUUGUUGCGCUAGaGCGca--CG- -5'
20137 3' -50.7 NC_004687.1 + 23298 0.66 0.993578
Target:  5'- gCCUACGA--GCGCGAgCUCGCu--- -3'
miRNA:   3'- aGGAUGUUguUGCGCUaGAGCGcacg -5'
20137 3' -50.7 NC_004687.1 + 25131 0.67 0.988914
Target:  5'- gCCUGCAGCGccucaaagGCGcCGAcgaUCGCGgGCa -3'
miRNA:   3'- aGGAUGUUGU--------UGC-GCUag-AGCGCaCG- -5'
20137 3' -50.7 NC_004687.1 + 25461 0.71 0.909199
Target:  5'- aCCUGCGGCAGCGCGGcCagCGCa-GCa -3'
miRNA:   3'- aGGAUGUUGUUGCGCUaGa-GCGcaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.