miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20137 5' -57.9 NC_004687.1 + 98222 0.66 0.865582
Target:  5'- gGGcCAUGCAGGCCGU-UCGGCgCAaCAa -3'
miRNA:   3'- gCC-GUGCGUCUGGCGcAGCUG-GUaGU- -5'
20137 5' -57.9 NC_004687.1 + 150114 0.66 0.863369
Target:  5'- cCGGCcaacaaGCAGGCCaucgcguucggcaaGCGUC-ACCAUCGc -3'
miRNA:   3'- -GCCGug----CGUCUGG--------------CGCAGcUGGUAGU- -5'
20137 5' -57.9 NC_004687.1 + 14852 0.66 0.858135
Target:  5'- uGGCcagcaGCGCGucACCGuCGUCGACCAa-- -3'
miRNA:   3'- gCCG-----UGCGUc-UGGC-GCAGCUGGUagu -5'
20137 5' -57.9 NC_004687.1 + 75409 0.66 0.858135
Target:  5'- cCGGCGCgGCAGccGCCGCc-CGGgCGUCGg -3'
miRNA:   3'- -GCCGUG-CGUC--UGGCGcaGCUgGUAGU- -5'
20137 5' -57.9 NC_004687.1 + 151638 0.66 0.858135
Target:  5'- cCGGUGCGUAG-CgGCG-CGACgGUCu -3'
miRNA:   3'- -GCCGUGCGUCuGgCGCaGCUGgUAGu -5'
20137 5' -57.9 NC_004687.1 + 44736 0.66 0.858135
Target:  5'- uGGUGCgGCAGGCaGCG-CGACCAa-- -3'
miRNA:   3'- gCCGUG-CGUCUGgCGCaGCUGGUagu -5'
20137 5' -57.9 NC_004687.1 + 110101 0.66 0.850491
Target:  5'- cCGGCGCGCuGGAugccgccgcCCGcCGaCGACUGUCGg -3'
miRNA:   3'- -GCCGUGCG-UCU---------GGC-GCaGCUGGUAGU- -5'
20137 5' -57.9 NC_004687.1 + 60531 0.66 0.850491
Target:  5'- gGGUgaccuCGguGGCCGCGcCuACCGUCGa -3'
miRNA:   3'- gCCGu----GCguCUGGCGCaGcUGGUAGU- -5'
20137 5' -57.9 NC_004687.1 + 131100 0.66 0.850491
Target:  5'- aCGGCgGCGguGACCGCc-UGGCCGaCAc -3'
miRNA:   3'- -GCCG-UGCguCUGGCGcaGCUGGUaGU- -5'
20137 5' -57.9 NC_004687.1 + 59550 0.66 0.850491
Target:  5'- cCGGCACgGguGACCGaCGaaGACCugaccuucGUCAa -3'
miRNA:   3'- -GCCGUG-CguCUGGC-GCagCUGG--------UAGU- -5'
20137 5' -57.9 NC_004687.1 + 30592 0.66 0.848161
Target:  5'- gCGGCACucucgucgagaucgGCAGACCaaccgcgaccgGUGUCGGCC-UCc -3'
miRNA:   3'- -GCCGUG--------------CGUCUGG-----------CGCAGCUGGuAGu -5'
20137 5' -57.9 NC_004687.1 + 85027 0.66 0.842658
Target:  5'- aGGUAauCGCGGA-UGCGguaGACCAUCAc -3'
miRNA:   3'- gCCGU--GCGUCUgGCGCag-CUGGUAGU- -5'
20137 5' -57.9 NC_004687.1 + 111812 0.66 0.842658
Target:  5'- gGGUAagGCAGACgcucgGCGUCGcacuugGCCAUCAg -3'
miRNA:   3'- gCCGUg-CGUCUGg----CGCAGC------UGGUAGU- -5'
20137 5' -57.9 NC_004687.1 + 140682 0.66 0.842658
Target:  5'- aCGuGCcCGcCGGAUCGaCGgucgCGACCAUCAc -3'
miRNA:   3'- -GC-CGuGC-GUCUGGC-GCa---GCUGGUAGU- -5'
20137 5' -57.9 NC_004687.1 + 56395 0.66 0.842658
Target:  5'- cCGGUucCGUAGACCgGCGUCauauccguugGACCAUa- -3'
miRNA:   3'- -GCCGu-GCGUCUGG-CGCAG----------CUGGUAgu -5'
20137 5' -57.9 NC_004687.1 + 139344 0.66 0.841864
Target:  5'- uCGGCAcugucuuCGCuGGCCGCGacggUGGCCAcCAa -3'
miRNA:   3'- -GCCGU-------GCGuCUGGCGCa---GCUGGUaGU- -5'
20137 5' -57.9 NC_004687.1 + 79902 0.66 0.834642
Target:  5'- uGGCGcCGUcGACgC-CGUCGAUCGUCAa -3'
miRNA:   3'- gCCGU-GCGuCUG-GcGCAGCUGGUAGU- -5'
20137 5' -57.9 NC_004687.1 + 110012 0.66 0.834642
Target:  5'- cCGGCACGUGGggcuGCUGCG-CGGCUA-CAc -3'
miRNA:   3'- -GCCGUGCGUC----UGGCGCaGCUGGUaGU- -5'
20137 5' -57.9 NC_004687.1 + 70506 0.66 0.834642
Target:  5'- uCGGuCACGcCGGugC-CGUCGGCCAc-- -3'
miRNA:   3'- -GCC-GUGC-GUCugGcGCAGCUGGUagu -5'
20137 5' -57.9 NC_004687.1 + 31415 0.66 0.834642
Target:  5'- gGGCACGCuGcacACCGCcggggccaauaaGUCGGCuCAUCc -3'
miRNA:   3'- gCCGUGCGuC---UGGCG------------CAGCUG-GUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.