miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20137 5' -57.9 NC_004687.1 + 24158 0.69 0.707431
Target:  5'- uCGuGCGCGCggugcucucGGACCGCuacgCGAUCAUCGa -3'
miRNA:   3'- -GC-CGUGCG---------UCUGGCGca--GCUGGUAGU- -5'
20137 5' -57.9 NC_004687.1 + 10592 0.7 0.647865
Target:  5'- aGGC-CGC-GACCGCcgUGGCCAUCGa -3'
miRNA:   3'- gCCGuGCGuCUGGCGcaGCUGGUAGU- -5'
20137 5' -57.9 NC_004687.1 + 38224 0.7 0.657869
Target:  5'- aCGGCGgGCGGcaACa-UGUCGACCGUCGa -3'
miRNA:   3'- -GCCGUgCGUC--UGgcGCAGCUGGUAGU- -5'
20137 5' -57.9 NC_004687.1 + 140784 0.7 0.657869
Target:  5'- gGGCugGCGcccGACCgGCGUCaacACCAUCu -3'
miRNA:   3'- gCCGugCGU---CUGG-CGCAGc--UGGUAGu -5'
20137 5' -57.9 NC_004687.1 + 12877 0.69 0.667853
Target:  5'- aGGCGC-CGGugCGCGgCGGCgAUCGc -3'
miRNA:   3'- gCCGUGcGUCugGCGCaGCUGgUAGU- -5'
20137 5' -57.9 NC_004687.1 + 68583 0.69 0.667853
Target:  5'- gCGGUucAUGgAGGCCGCGaUCGccaagGCCAUCAa -3'
miRNA:   3'- -GCCG--UGCgUCUGGCGC-AGC-----UGGUAGU- -5'
20137 5' -57.9 NC_004687.1 + 31255 0.69 0.68674
Target:  5'- aCGGCGUGCuGAccgagggcaaccaCCGCG-CGGCCAUCGc -3'
miRNA:   3'- -GCCGUGCGuCU-------------GGCGCaGCUGGUAGU- -5'
20137 5' -57.9 NC_004687.1 + 36941 0.69 0.687731
Target:  5'- aGGCuucgcCGguGGCCGC-UCGGCCAagcUCAa -3'
miRNA:   3'- gCCGu----GCguCUGGCGcAGCUGGU---AGU- -5'
20137 5' -57.9 NC_004687.1 + 86747 0.69 0.687731
Target:  5'- aCGGCuCGCAaGCCGCGccaGACCGUgGg -3'
miRNA:   3'- -GCCGuGCGUcUGGCGCag-CUGGUAgU- -5'
20137 5' -57.9 NC_004687.1 + 73973 0.7 0.63785
Target:  5'- gCGGCGCGguGGCCGgaGUgacCGGCCAgggCGg -3'
miRNA:   3'- -GCCGUGCguCUGGCg-CA---GCUGGUa--GU- -5'
20137 5' -57.9 NC_004687.1 + 101857 0.7 0.626827
Target:  5'- cCGGCucagacccucaucACGCGcGACCuugGCGUCGGCCAggaUCAg -3'
miRNA:   3'- -GCCG-------------UGCGU-CUGG---CGCAGCUGGU---AGU- -5'
20137 5' -57.9 NC_004687.1 + 63862 0.7 0.607805
Target:  5'- aGGCACuGCAGGCgGCG-CGGCCu--- -3'
miRNA:   3'- gCCGUG-CGUCUGgCGCaGCUGGuagu -5'
20137 5' -57.9 NC_004687.1 + 18126 0.8 0.188799
Target:  5'- gGGCGCGCGGGCUGCGUCucaaCAUCAa -3'
miRNA:   3'- gCCGUGCGUCUGGCGCAGcug-GUAGU- -5'
20137 5' -57.9 NC_004687.1 + 130579 0.74 0.436307
Target:  5'- uGGUACGCGGacaaGCCG-GUCGACCGUg- -3'
miRNA:   3'- gCCGUGCGUC----UGGCgCAGCUGGUAgu -5'
20137 5' -57.9 NC_004687.1 + 105476 0.74 0.436307
Target:  5'- cCGGCGCGCGGccuaCGCG-CaGGCCGUCAa -3'
miRNA:   3'- -GCCGUGCGUCug--GCGCaG-CUGGUAGU- -5'
20137 5' -57.9 NC_004687.1 + 40448 0.72 0.519295
Target:  5'- cCGGCGCG-AGACCGagGUUGuaACCAUCAg -3'
miRNA:   3'- -GCCGUGCgUCUGGCg-CAGC--UGGUAGU- -5'
20137 5' -57.9 NC_004687.1 + 64768 0.71 0.558166
Target:  5'- uGGCAUGCAGGCCGgUGacggCGGCUcgCAg -3'
miRNA:   3'- gCCGUGCGUCUGGC-GCa---GCUGGuaGU- -5'
20137 5' -57.9 NC_004687.1 + 54187 0.71 0.597816
Target:  5'- gGGcCACcCAGGCCGCugcucgGUCGGCUAUCGg -3'
miRNA:   3'- gCC-GUGcGUCUGGCG------CAGCUGGUAGU- -5'
20137 5' -57.9 NC_004687.1 + 24797 0.71 0.597816
Target:  5'- cCGGUggGCAGACCcacgccuucgGUGUCGGCCAg-- -3'
miRNA:   3'- -GCCGugCGUCUGG----------CGCAGCUGGUagu -5'
20137 5' -57.9 NC_004687.1 + 95194 0.71 0.597816
Target:  5'- aGGCAgGCGuGCCGaUGUCGACCAg-- -3'
miRNA:   3'- gCCGUgCGUcUGGC-GCAGCUGGUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.