miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20169 3' -61.3 NC_004687.1 + 111758 0.66 0.672338
Target:  5'- -cUCaACUGGCacCUGACCGGCGGacCGAg- -3'
miRNA:   3'- gcAG-UGGCCG--GACUGGCCGCC--GCUau -5'
20169 3' -61.3 NC_004687.1 + 116743 0.66 0.672338
Target:  5'- -uUCA-UGGCCUGugCGGUGGCcAUGg -3'
miRNA:   3'- gcAGUgGCCGGACugGCCGCCGcUAU- -5'
20169 3' -61.3 NC_004687.1 + 40840 0.66 0.672338
Target:  5'- uGUCGCCGccGCUggUGGCCGGUgccggggugGGCGGUc -3'
miRNA:   3'- gCAGUGGC--CGG--ACUGGCCG---------CCGCUAu -5'
20169 3' -61.3 NC_004687.1 + 134277 0.66 0.71119
Target:  5'- aCGaCACCuGGCCggucgagaagGACUGGUGGCGc-- -3'
miRNA:   3'- -GCaGUGG-CCGGa---------CUGGCCGCCGCuau -5'
20169 3' -61.3 NC_004687.1 + 136821 0.66 0.662529
Target:  5'- aCGUUGCCuGGCgCUGGcucgacgaguCCGGCGGCa--- -3'
miRNA:   3'- -GCAGUGG-CCG-GACU----------GGCCGCCGcuau -5'
20169 3' -61.3 NC_004687.1 + 138728 0.66 0.672338
Target:  5'- uGUCGgUGGCCUGACCgaggcccuGGaCGGCa--- -3'
miRNA:   3'- gCAGUgGCCGGACUGG--------CC-GCCGcuau -5'
20169 3' -61.3 NC_004687.1 + 8183 0.66 0.672338
Target:  5'- cCG-CGCgCGGCCUGugCGGCcaugGGCa--- -3'
miRNA:   3'- -GCaGUG-GCCGGACugGCCG----CCGcuau -5'
20169 3' -61.3 NC_004687.1 + 142474 0.66 0.672338
Target:  5'- aCGUCGCUGcucaggacgcGCUgcgGGCCuccaaGGCGGCGGUGg -3'
miRNA:   3'- -GCAGUGGC----------CGGa--CUGG-----CCGCCGCUAU- -5'
20169 3' -61.3 NC_004687.1 + 70992 0.66 0.682116
Target:  5'- cCG-CGCUGGUCUGGCUGGUGGaCa--- -3'
miRNA:   3'- -GCaGUGGCCGGACUGGCCGCC-Gcuau -5'
20169 3' -61.3 NC_004687.1 + 87220 0.66 0.71119
Target:  5'- gCGcCACCGGCgccaggCUGGcCCGGCGugacGCGAUc -3'
miRNA:   3'- -GCaGUGGCCG------GACU-GGCCGC----CGCUAu -5'
20169 3' -61.3 NC_004687.1 + 27889 0.66 0.672338
Target:  5'- aGUCGCgCGGCgUGccACCGGCGGa---- -3'
miRNA:   3'- gCAGUG-GCCGgAC--UGGCCGCCgcuau -5'
20169 3' -61.3 NC_004687.1 + 2131 0.66 0.662529
Target:  5'- uGUguCCGGCCUGAgagccaCCGuuGUGGCGGa- -3'
miRNA:   3'- gCAguGGCCGGACU------GGC--CGCCGCUau -5'
20169 3' -61.3 NC_004687.1 + 80789 0.66 0.708305
Target:  5'- cCGaCACCGGCaaucucuaccgcuggGACuCGGUGGCGGa- -3'
miRNA:   3'- -GCaGUGGCCGga-------------CUG-GCCGCCGCUau -5'
20169 3' -61.3 NC_004687.1 + 24068 0.66 0.691857
Target:  5'- aCGUCaACCGGCac-GCCGaGCgGGCGAc- -3'
miRNA:   3'- -GCAG-UGGCCGgacUGGC-CG-CCGCUau -5'
20169 3' -61.3 NC_004687.1 + 19597 0.66 0.691857
Target:  5'- aGUCGgUGGCCgagGACaucGCGGCGGg- -3'
miRNA:   3'- gCAGUgGCCGGa--CUGgc-CGCCGCUau -5'
20169 3' -61.3 NC_004687.1 + 138964 0.66 0.71119
Target:  5'- gCGUCGa-GGaCCUGGagcUCGGCGGCGGc- -3'
miRNA:   3'- -GCAGUggCC-GGACU---GGCCGCCGCUau -5'
20169 3' -61.3 NC_004687.1 + 71856 0.66 0.672338
Target:  5'- uGUaGCUGGCCUGGugcaccaggacgUCGGUGGUGAUc -3'
miRNA:   3'- gCAgUGGCCGGACU------------GGCCGCCGCUAu -5'
20169 3' -61.3 NC_004687.1 + 65055 0.66 0.71119
Target:  5'- gGUCGCCugGGCCacccaGCUGcGCGGCGAc- -3'
miRNA:   3'- gCAGUGG--CCGGac---UGGC-CGCCGCUau -5'
20169 3' -61.3 NC_004687.1 + 91160 0.66 0.665474
Target:  5'- cCGUCACCGGCCUGcaugccaaagccccaGCCcuuguacGGCaGCGu-- -3'
miRNA:   3'- -GCAGUGGCCGGAC---------------UGG-------CCGcCGCuau -5'
20169 3' -61.3 NC_004687.1 + 133903 0.66 0.662529
Target:  5'- aG-CugCaGGCCcgGACgCGGCGGCGGg- -3'
miRNA:   3'- gCaGugG-CCGGa-CUG-GCCGCCGCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.