miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20169 3' -61.3 NC_004687.1 + 69857 0.95 0.00918
Target:  5'- aCG-UACCGGCCUGACCGGCGGCGAUAa -3'
miRNA:   3'- -GCaGUGGCCGGACUGGCCGCCGCUAU- -5'
20169 3' -61.3 NC_004687.1 + 91342 0.79 0.119602
Target:  5'- -cUCACCGGUCgGGCCGGUGGUGGUGu -3'
miRNA:   3'- gcAGUGGCCGGaCUGGCCGCCGCUAU- -5'
20169 3' -61.3 NC_004687.1 + 131562 0.78 0.142434
Target:  5'- uCGgCGCCGGUCUGACCGGUgaacGGCGAg- -3'
miRNA:   3'- -GCaGUGGCCGGACUGGCCG----CCGCUau -5'
20169 3' -61.3 NC_004687.1 + 75319 0.74 0.265358
Target:  5'- --cCACCGGCCUGAUgGGCGGUc--- -3'
miRNA:   3'- gcaGUGGCCGGACUGgCCGCCGcuau -5'
20169 3' -61.3 NC_004687.1 + 77164 0.74 0.271484
Target:  5'- aGUCauaGCUGGCCgGACCGGUGGCa--- -3'
miRNA:   3'- gCAG---UGGCCGGaCUGGCCGCCGcuau -5'
20169 3' -61.3 NC_004687.1 + 73980 0.74 0.277723
Target:  5'- gGUgGCCGGagUGACCGGCcagGGCGGUAu -3'
miRNA:   3'- gCAgUGGCCggACUGGCCG---CCGCUAU- -5'
20169 3' -61.3 NC_004687.1 + 24361 0.73 0.297124
Target:  5'- cCGuUCACCGGUCaGACCGGCGcCGAg- -3'
miRNA:   3'- -GC-AGUGGCCGGaCUGGCCGCcGCUau -5'
20169 3' -61.3 NC_004687.1 + 80842 0.73 0.303821
Target:  5'- uCGUC-UCGGCC--ACCGGCGGUGGUGc -3'
miRNA:   3'- -GCAGuGGCCGGacUGGCCGCCGCUAU- -5'
20169 3' -61.3 NC_004687.1 + 327 0.73 0.303821
Target:  5'- uCGUCAUCGGCCUGAUCGGgugGGUGc-- -3'
miRNA:   3'- -GCAGUGGCCGGACUGGCCg--CCGCuau -5'
20169 3' -61.3 NC_004687.1 + 45527 0.73 0.310634
Target:  5'- uCGUCAgCGGCCaGGuuGGUGGUGAUc -3'
miRNA:   3'- -GCAGUgGCCGGaCUggCCGCCGCUAu -5'
20169 3' -61.3 NC_004687.1 + 9661 0.73 0.310634
Target:  5'- uCGUCACCGGCUgGACCaucGuCGGCGAg- -3'
miRNA:   3'- -GCAGUGGCCGGaCUGGc--C-GCCGCUau -5'
20169 3' -61.3 NC_004687.1 + 53913 0.72 0.339039
Target:  5'- cCGUCACCGcGUCggcGACCGGaccauGGCGGUGc -3'
miRNA:   3'- -GCAGUGGC-CGGa--CUGGCCg----CCGCUAU- -5'
20169 3' -61.3 NC_004687.1 + 121012 0.72 0.339039
Target:  5'- cCGcCGCCaGCCUGACCGaguuccuCGGCGAUGa -3'
miRNA:   3'- -GCaGUGGcCGGACUGGCc------GCCGCUAU- -5'
20169 3' -61.3 NC_004687.1 + 127227 0.72 0.339039
Target:  5'- gGUCACCGGaacgCUGGgCGGUGcGCGAUGc -3'
miRNA:   3'- gCAGUGGCCg---GACUgGCCGC-CGCUAU- -5'
20169 3' -61.3 NC_004687.1 + 28035 0.72 0.346429
Target:  5'- uGUCACCGaaGUCcagcgGACUGGUGGCGGUGa -3'
miRNA:   3'- gCAGUGGC--CGGa----CUGGCCGCCGCUAU- -5'
20169 3' -61.3 NC_004687.1 + 89394 0.72 0.346429
Target:  5'- gGUCACCGGUcgCUGGCUGcGCGGCu--- -3'
miRNA:   3'- gCAGUGGCCG--GACUGGC-CGCCGcuau -5'
20169 3' -61.3 NC_004687.1 + 115081 0.72 0.361552
Target:  5'- cCGgCACCGGCCaccAgCGGCGGCGAc- -3'
miRNA:   3'- -GCaGUGGCCGGac-UgGCCGCCGCUau -5'
20169 3' -61.3 NC_004687.1 + 69970 0.72 0.369284
Target:  5'- uCGUUGCgGGCCgaGACCGGCGcGCGu-- -3'
miRNA:   3'- -GCAGUGgCCGGa-CUGGCCGC-CGCuau -5'
20169 3' -61.3 NC_004687.1 + 139738 0.71 0.401325
Target:  5'- gGUCACCGGUCUGGacaCGGCGcUGAg- -3'
miRNA:   3'- gCAGUGGCCGGACUg--GCCGCcGCUau -5'
20169 3' -61.3 NC_004687.1 + 93908 0.7 0.43508
Target:  5'- aGUgACCGGCaucaggccucCUGACCGaCGGCGAg- -3'
miRNA:   3'- gCAgUGGCCG----------GACUGGCcGCCGCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.