miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20169 5' -59.2 NC_004687.1 + 97352 0.66 0.773749
Target:  5'- --gGUCGUCGGCGGGguGuUgGGCGg -3'
miRNA:   3'- uugUAGCGGUCGCUCguCuGgCCGCa -5'
20169 5' -59.2 NC_004687.1 + 45521 0.66 0.773749
Target:  5'- uGCAgcUCGUCAGCGGcCAGGuuGGUGg -3'
miRNA:   3'- uUGU--AGCGGUCGCUcGUCUggCCGCa -5'
20169 5' -59.2 NC_004687.1 + 50304 0.66 0.773749
Target:  5'- cGACAggUCGCCAGCG-GUAGuACUcGCGg -3'
miRNA:   3'- -UUGU--AGCGGUCGCuCGUC-UGGcCGCa -5'
20169 5' -59.2 NC_004687.1 + 120376 0.66 0.76442
Target:  5'- gAACAUCGCgccaaugugcuCGGCGAcCGGACCGcGCa- -3'
miRNA:   3'- -UUGUAGCG-----------GUCGCUcGUCUGGC-CGca -5'
20169 5' -59.2 NC_004687.1 + 69644 0.66 0.76442
Target:  5'- uGGCAcUgGUgGGCGAGCccACCGGCGg -3'
miRNA:   3'- -UUGU-AgCGgUCGCUCGucUGGCCGCa -5'
20169 5' -59.2 NC_004687.1 + 19610 0.66 0.76442
Target:  5'- gGACAUCG-CGGCGGGCcuggacguccuGGGCCGGa-- -3'
miRNA:   3'- -UUGUAGCgGUCGCUCG-----------UCUGGCCgca -5'
20169 5' -59.2 NC_004687.1 + 110177 0.66 0.76442
Target:  5'- uGACGUCGuccaucuuCCGGCGGGCcuuG-UCGGCGUa -3'
miRNA:   3'- -UUGUAGC--------GGUCGCUCGu--CuGGCCGCA- -5'
20169 5' -59.2 NC_004687.1 + 63486 0.66 0.76442
Target:  5'- uGACAUUGUCGGCGgcGGCAaucgccauGACguCGGCGUa -3'
miRNA:   3'- -UUGUAGCGGUCGC--UCGU--------CUG--GCCGCA- -5'
20169 5' -59.2 NC_004687.1 + 48859 0.66 0.76442
Target:  5'- gGACGUCGaCGGCGAcccCGGACCGcacaGCGUg -3'
miRNA:   3'- -UUGUAGCgGUCGCUc--GUCUGGC----CGCA- -5'
20169 5' -59.2 NC_004687.1 + 52588 0.66 0.76348
Target:  5'- cGACGUCGagGGCGaAGCGGACguccuucUGGCGg -3'
miRNA:   3'- -UUGUAGCggUCGC-UCGUCUG-------GCCGCa -5'
20169 5' -59.2 NC_004687.1 + 103218 0.66 0.758767
Target:  5'- cGACuUCGCUgacgccgucaggaagGGCGAgGC-GACCGGCGa -3'
miRNA:   3'- -UUGuAGCGG---------------UCGCU-CGuCUGGCCGCa -5'
20169 5' -59.2 NC_004687.1 + 128791 0.66 0.754976
Target:  5'- cAGCAuuUCGCUAgccaacuucGCGAGCAGGCCcugcaGCGUc -3'
miRNA:   3'- -UUGU--AGCGGU---------CGCUCGUCUGGc----CGCA- -5'
20169 5' -59.2 NC_004687.1 + 108208 0.66 0.754976
Target:  5'- cGGCGagCGCCuGCGGGCccugguGGACCGGUu- -3'
miRNA:   3'- -UUGUa-GCGGuCGCUCG------UCUGGCCGca -5'
20169 5' -59.2 NC_004687.1 + 143772 0.66 0.754976
Target:  5'- cGACGaCGgCGGCGGGCAGuccucgaucgccACCGGCc- -3'
miRNA:   3'- -UUGUaGCgGUCGCUCGUC------------UGGCCGca -5'
20169 5' -59.2 NC_004687.1 + 116280 0.66 0.754975
Target:  5'- --gGUCGgacCCAGCGGGCcgucugccgacGGGCCGGUGc -3'
miRNA:   3'- uugUAGC---GGUCGCUCG-----------UCUGGCCGCa -5'
20169 5' -59.2 NC_004687.1 + 118143 0.66 0.754975
Target:  5'- --uGUCgGCCAGCGuGCccagcGGCUGGCGg -3'
miRNA:   3'- uugUAG-CGGUCGCuCGu----CUGGCCGCa -5'
20169 5' -59.2 NC_004687.1 + 13450 0.66 0.754975
Target:  5'- cGCAgCGCguccugagCAGCGAcGUAGGCCGGgGUg -3'
miRNA:   3'- uUGUaGCG--------GUCGCU-CGUCUGGCCgCA- -5'
20169 5' -59.2 NC_004687.1 + 34658 0.66 0.754975
Target:  5'- cAGCAggaUGcCCAGCGGGU-GACCGGUGc -3'
miRNA:   3'- -UUGUa--GC-GGUCGCUCGuCUGGCCGCa -5'
20169 5' -59.2 NC_004687.1 + 39682 0.66 0.745425
Target:  5'- cGGCGUCGgUGGCGuGCAG-CCGGgGc -3'
miRNA:   3'- -UUGUAGCgGUCGCuCGUCuGGCCgCa -5'
20169 5' -59.2 NC_004687.1 + 25722 0.66 0.745425
Target:  5'- -uCAUCGCCGGUGcGGUAGGcgaagccuCCGGCa- -3'
miRNA:   3'- uuGUAGCGGUCGC-UCGUCU--------GGCCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.