miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2019 3' -60.5 NC_001347.2 + 40391 0.66 0.8367
Target:  5'- cACCG-CCGGUgCGGGGCcGCGUGGUGg -3'
miRNA:   3'- cUGGCgGGCUA-GCCUCG-UGCGUCGCg -5'
2019 3' -60.5 NC_001347.2 + 88617 0.66 0.8367
Target:  5'- cGGCgGCCUGcgCGGccuGCAcCGCGGCu- -3'
miRNA:   3'- -CUGgCGGGCuaGCCu--CGU-GCGUCGcg -5'
2019 3' -60.5 NC_001347.2 + 87243 0.66 0.8367
Target:  5'- aGACgGUgCGAgcagUUGGGG-AUGCGGCGCg -3'
miRNA:   3'- -CUGgCGgGCU----AGCCUCgUGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 2421 0.66 0.8367
Target:  5'- uGCUGCCCGAgcuggacCGcGAGCAgugggaGCGGcCGCg -3'
miRNA:   3'- cUGGCGGGCUa------GC-CUCGUg-----CGUC-GCG- -5'
2019 3' -60.5 NC_001347.2 + 159792 0.66 0.8367
Target:  5'- aGCCGUCUGAUUuGGGCuuguagccaGCAGUGCu -3'
miRNA:   3'- cUGGCGGGCUAGcCUCGug-------CGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 88341 0.66 0.828861
Target:  5'- aGCCGUgguaaCCG-UCGccGCugGCGGCGCu -3'
miRNA:   3'- cUGGCG-----GGCuAGCcuCGugCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 77933 0.66 0.820864
Target:  5'- gGugCGCUCGGagCGGcuggaGGCGCaGCuGCGCg -3'
miRNA:   3'- -CugGCGGGCUa-GCC-----UCGUG-CGuCGCG- -5'
2019 3' -60.5 NC_001347.2 + 100861 0.66 0.820864
Target:  5'- aGAgCGUcacagCCGAggCGGcGCgGCGCAGCGCc -3'
miRNA:   3'- -CUgGCG-----GGCUa-GCCuCG-UGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 81019 0.66 0.819245
Target:  5'- aACCGCUCG-UCGccccagaccaacAGCACGCcgGGCGCg -3'
miRNA:   3'- cUGGCGGGCuAGCc-----------UCGUGCG--UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 126633 0.66 0.812713
Target:  5'- uGGCCuaCCGcaCGGcGCugGCAcGCGCg -3'
miRNA:   3'- -CUGGcgGGCuaGCCuCGugCGU-CGCG- -5'
2019 3' -60.5 NC_001347.2 + 183470 0.66 0.812713
Target:  5'- aGCgCGCCuCGGccUCGGGagacGCGCGCAGCcccaGCg -3'
miRNA:   3'- cUG-GCGG-GCU--AGCCU----CGUGCGUCG----CG- -5'
2019 3' -60.5 NC_001347.2 + 191203 0.66 0.812713
Target:  5'- -cCCGCaacgCCGcUCGGAGCAccgcCGCAGCccgGCu -3'
miRNA:   3'- cuGGCG----GGCuAGCCUCGU----GCGUCG---CG- -5'
2019 3' -60.5 NC_001347.2 + 197654 0.66 0.804418
Target:  5'- cGGCCuGCUacacagcuacuuUGAagacgUGGAGCGCGCuGCGCa -3'
miRNA:   3'- -CUGG-CGG------------GCUa----GCCUCGUGCGuCGCG- -5'
2019 3' -60.5 NC_001347.2 + 126863 0.66 0.803581
Target:  5'- cGACCaGCCCGcacggcUUGGGGCugGCcggcuacGGCGg -3'
miRNA:   3'- -CUGG-CGGGCu-----AGCCUCGugCG-------UCGCg -5'
2019 3' -60.5 NC_001347.2 + 87069 0.66 0.801902
Target:  5'- aGACCGCgCCGGUCcaacagccgcaugaGGcaaaagcccAGCACGUuacccAGCGCc -3'
miRNA:   3'- -CUGGCG-GGCUAG--------------CC---------UCGUGCG-----UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 208103 0.66 0.795984
Target:  5'- uGGgCGCaCCGAcggCGGAGC-CGCgucgcucgccGGCGCu -3'
miRNA:   3'- -CUgGCG-GGCUa--GCCUCGuGCG----------UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 142383 0.67 0.787418
Target:  5'- cGCCGCCgGGggGGAgguGCACGaccuguCGGCGCu -3'
miRNA:   3'- cUGGCGGgCUagCCU---CGUGC------GUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 126178 0.67 0.787418
Target:  5'- -cUCGCCCGAacaCGGcGGCGaGguGCGCg -3'
miRNA:   3'- cuGGCGGGCUa--GCC-UCGUgCguCGCG- -5'
2019 3' -60.5 NC_001347.2 + 18734 0.67 0.787418
Target:  5'- uGCCGCUuCGAccgCGGAuuGCGCGGCGa -3'
miRNA:   3'- cUGGCGG-GCUa--GCCUcgUGCGUCGCg -5'
2019 3' -60.5 NC_001347.2 + 909 0.67 0.787418
Target:  5'- -cCCGCCCcuuGGUCGcGGC-CGCGGgGCc -3'
miRNA:   3'- cuGGCGGG---CUAGCcUCGuGCGUCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.