Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
2019 | 3' | -60.5 | NC_001347.2 | + | 180271 | 0.7 | 0.57144 |
Target: 5'- cGACCGCagCGGUggcUGGAGaaGCGCAGCGUc -3' miRNA: 3'- -CUGGCGg-GCUA---GCCUCg-UGCGUCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 82800 | 0.7 | 0.584801 |
Target: 5'- cGACCGCCCgGAcgugcucaaaccgcgUCGuGAGCGCgGCGGCu- -3' miRNA: 3'- -CUGGCGGG-CU---------------AGC-CUCGUG-CGUCGcg -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 168621 | 0.7 | 0.584801 |
Target: 5'- uGGuaGCCCGAgcUCGGcaacgcacccacgaaGGCGCGCAcGCGCu -3' miRNA: 3'- -CUggCGGGCU--AGCC---------------UCGUGCGU-CGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 170385 | 0.7 | 0.590546 |
Target: 5'- uGCCGUCCGAcaGGAaCGCGCuguGGCGCg -3' miRNA: 3'- cUGGCGGGCUagCCUcGUGCG---UCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 37621 | 0.7 | 0.600143 |
Target: 5'- gGACuCGUcaUCGuAUCGGAGCGCGUAGCu- -3' miRNA: 3'- -CUG-GCG--GGC-UAGCCUCGUGCGUCGcg -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 176621 | 0.7 | 0.600143 |
Target: 5'- gGAUUGCCCGGcccagaCGGuGCacgGCGCGGCGUa -3' miRNA: 3'- -CUGGCGGGCUa-----GCCuCG---UGCGUCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 118232 | 0.7 | 0.600143 |
Target: 5'- aACCGCCgaagcacgCGcUCGGGGCAgCGCAGCa- -3' miRNA: 3'- cUGGCGG--------GCuAGCCUCGU-GCGUCGcg -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 2140 | 0.69 | 0.677135 |
Target: 5'- gGACgCGCacgcggUGGUCGGGGCggACGCGGCaGCa -3' miRNA: 3'- -CUG-GCGg-----GCUAGCCUCG--UGCGUCG-CG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 90893 | 0.69 | 0.648315 |
Target: 5'- cGGCCGCCaaGAUCcaGGAGCgcuACGCggagcugcagaAGCGCa -3' miRNA: 3'- -CUGGCGGg-CUAG--CCUCG---UGCG-----------UCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 125319 | 0.69 | 0.667551 |
Target: 5'- aGCCGCgCCGGccUC-GAGCAUGUAcGCGCu -3' miRNA: 3'- cUGGCG-GGCU--AGcCUCGUGCGU-CGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 155541 | 0.69 | 0.677135 |
Target: 5'- cGACCGCUggugaucgaCGAggacgCGGAGCcCGCGGCu- -3' miRNA: 3'- -CUGGCGG---------GCUa----GCCUCGuGCGUCGcg -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 139533 | 0.69 | 0.648315 |
Target: 5'- aGCCGaCgaGGUCucgcuGGAuGCGCGCAGCGCu -3' miRNA: 3'- cUGGC-GggCUAG-----CCU-CGUGCGUCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 87576 | 0.69 | 0.677135 |
Target: 5'- aGACagcaGCCCGuggcCGuGAGCAgacCGCGGUGCa -3' miRNA: 3'- -CUGg---CGGGCua--GC-CUCGU---GCGUCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 100951 | 0.69 | 0.667551 |
Target: 5'- cGCCGCCgCGAU-GGAGaaCugGuCGGCGCu -3' miRNA: 3'- cUGGCGG-GCUAgCCUC--GugC-GUCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 172682 | 0.69 | 0.667551 |
Target: 5'- aGACgCGCCUc-UCGGAGCcgccgACGCuGGCGCu -3' miRNA: 3'- -CUG-GCGGGcuAGCCUCG-----UGCG-UCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 194422 | 0.69 | 0.648315 |
Target: 5'- aGCCGCgCGAgcgugcgagCGGGGUucaccUGCAGCGCu -3' miRNA: 3'- cUGGCGgGCUa--------GCCUCGu----GCGUCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 15365 | 0.69 | 0.648315 |
Target: 5'- cGuuGCCCGAU--GAGCgACGCgAGCGCg -3' miRNA: 3'- cUggCGGGCUAgcCUCG-UGCG-UCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 79160 | 0.69 | 0.629034 |
Target: 5'- cGCCGCuuGAUCacggcagacgaGGAGCGgCGCGGCcCa -3' miRNA: 3'- cUGGCGggCUAG-----------CCUCGU-GCGUCGcG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 85510 | 0.69 | 0.677135 |
Target: 5'- gGGCgGCuuGAgCGG-GCGCGC-GCGCu -3' miRNA: 3'- -CUGgCGggCUaGCCuCGUGCGuCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 136329 | 0.69 | 0.677135 |
Target: 5'- cGGCCGCCCaGUggaaaaauacCGGcGCAUGCgcacGGCGCa -3' miRNA: 3'- -CUGGCGGGcUA----------GCCuCGUGCG----UCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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