miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2019 3' -60.5 NC_001347.2 + 75072 0.77 0.256913
Target:  5'- cGACCGCCCGugagaCGcugcauGAGCugGUAGCGCu -3'
miRNA:   3'- -CUGGCGGGCua---GC------CUCGugCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 37907 0.73 0.41879
Target:  5'- cACUGCCCGugcggcUCGGcGCccacaGCGCGGCGCg -3'
miRNA:   3'- cUGGCGGGCu-----AGCCuCG-----UGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 129470 0.73 0.427106
Target:  5'- aGCCGUuuGAUCGaaaagaaaaaaaGAGCGCgucuGCAGCGCg -3'
miRNA:   3'- cUGGCGggCUAGC------------CUCGUG----CGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 104338 0.73 0.43552
Target:  5'- gGACCGCUgGAUCcG-GCACGCGGCcgGCg -3'
miRNA:   3'- -CUGGCGGgCUAGcCuCGUGCGUCG--CG- -5'
2019 3' -60.5 NC_001347.2 + 1930 0.73 0.43552
Target:  5'- uGCUGCCCGcgCGGuGGCugGgCuGCGCg -3'
miRNA:   3'- cUGGCGGGCuaGCC-UCGugC-GuCGCG- -5'
2019 3' -60.5 NC_001347.2 + 175000 0.73 0.444029
Target:  5'- gGGCCGUgCCGGU-GGAGuCGCaGCAGCGCc -3'
miRNA:   3'- -CUGGCG-GGCUAgCCUC-GUG-CGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 113409 0.72 0.460449
Target:  5'- gGAUCGCCCGAcgcgUCGacAGCAgugcugcCGCAGCGCu -3'
miRNA:   3'- -CUGGCGGGCU----AGCc-UCGU-------GCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 19762 0.72 0.461322
Target:  5'- uGCCGCaCCGGUUGGAGCA-GCucuuuuccAGCGUg -3'
miRNA:   3'- cUGGCG-GGCUAGCCUCGUgCG--------UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 174160 0.72 0.470101
Target:  5'- -cCCGCgCgGAUCGGAcacuuuagGCgGCGCAGCGCc -3'
miRNA:   3'- cuGGCG-GgCUAGCCU--------CG-UGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 189842 0.72 0.470101
Target:  5'- cGACCGCCCucGGUCcccguGAGCG-GUAGCGCg -3'
miRNA:   3'- -CUGGCGGG--CUAGc----CUCGUgCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 65803 0.72 0.487908
Target:  5'- -uCCGCCCGAgcaGGuGCGCGUGGUGa -3'
miRNA:   3'- cuGGCGGGCUag-CCuCGUGCGUCGCg -5'
2019 3' -60.5 NC_001347.2 + 158698 0.71 0.51888
Target:  5'- aGACCGCCUGccacgucggCGGccacauugugcagcaGGCGCGCGGCGg -3'
miRNA:   3'- -CUGGCGGGCua-------GCC---------------UCGUGCGUCGCg -5'
2019 3' -60.5 NC_001347.2 + 2025 0.71 0.524428
Target:  5'- aGGCCGCCgG--CGGGGaCGCGCcguGCGCg -3'
miRNA:   3'- -CUGGCGGgCuaGCCUC-GUGCGu--CGCG- -5'
2019 3' -60.5 NC_001347.2 + 197153 0.71 0.524428
Target:  5'- cGCCGCCC---CGGGGCccuCGguGCGCu -3'
miRNA:   3'- cUGGCGGGcuaGCCUCGu--GCguCGCG- -5'
2019 3' -60.5 NC_001347.2 + 196977 0.71 0.524428
Target:  5'- --aCGCCCGAgaCGGcGCGCGUccAGCGCc -3'
miRNA:   3'- cugGCGGGCUa-GCCuCGUGCG--UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 196369 0.71 0.540266
Target:  5'- cACCauuCCCGuUUGGAGCACGCcgagcugaggcuggAGCGCa -3'
miRNA:   3'- cUGGc--GGGCuAGCCUCGUGCG--------------UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 195863 0.71 0.546835
Target:  5'- uGCCGCCCGAUCcGcAGCauuuucgcuggcucaACGCcGGCGCu -3'
miRNA:   3'- cUGGCGGGCUAGcC-UCG---------------UGCG-UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 39131 0.71 0.551542
Target:  5'- cGGCCGUCCGAgCGGcAGCAgcgugccCGCGucGCGCu -3'
miRNA:   3'- -CUGGCGGGCUaGCC-UCGU-------GCGU--CGCG- -5'
2019 3' -60.5 NC_001347.2 + 136012 0.71 0.561941
Target:  5'- -cCCGgCCGAggucCGGAGCGgGCcGCGCc -3'
miRNA:   3'- cuGGCgGGCUa---GCCUCGUgCGuCGCG- -5'
2019 3' -60.5 NC_001347.2 + 77515 0.71 0.561941
Target:  5'- cGGCgCGUggCCGAggagUGGAaguuGCACGCGGCGCu -3'
miRNA:   3'- -CUG-GCG--GGCUa---GCCU----CGUGCGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.