miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2019 3' -60.5 NC_001347.2 + 180271 0.7 0.57144
Target:  5'- cGACCGCagCGGUggcUGGAGaaGCGCAGCGUc -3'
miRNA:   3'- -CUGGCGg-GCUA---GCCUCg-UGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 82800 0.7 0.584801
Target:  5'- cGACCGCCCgGAcgugcucaaaccgcgUCGuGAGCGCgGCGGCu- -3'
miRNA:   3'- -CUGGCGGG-CU---------------AGC-CUCGUG-CGUCGcg -5'
2019 3' -60.5 NC_001347.2 + 168621 0.7 0.584801
Target:  5'- uGGuaGCCCGAgcUCGGcaacgcacccacgaaGGCGCGCAcGCGCu -3'
miRNA:   3'- -CUggCGGGCU--AGCC---------------UCGUGCGU-CGCG- -5'
2019 3' -60.5 NC_001347.2 + 170385 0.7 0.590546
Target:  5'- uGCCGUCCGAcaGGAaCGCGCuguGGCGCg -3'
miRNA:   3'- cUGGCGGGCUagCCUcGUGCG---UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 37621 0.7 0.600143
Target:  5'- gGACuCGUcaUCGuAUCGGAGCGCGUAGCu- -3'
miRNA:   3'- -CUG-GCG--GGC-UAGCCUCGUGCGUCGcg -5'
2019 3' -60.5 NC_001347.2 + 176621 0.7 0.600143
Target:  5'- gGAUUGCCCGGcccagaCGGuGCacgGCGCGGCGUa -3'
miRNA:   3'- -CUGGCGGGCUa-----GCCuCG---UGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 118232 0.7 0.600143
Target:  5'- aACCGCCgaagcacgCGcUCGGGGCAgCGCAGCa- -3'
miRNA:   3'- cUGGCGG--------GCuAGCCUCGU-GCGUCGcg -5'
2019 3' -60.5 NC_001347.2 + 79160 0.69 0.629034
Target:  5'- cGCCGCuuGAUCacggcagacgaGGAGCGgCGCGGCcCa -3'
miRNA:   3'- cUGGCGggCUAG-----------CCUCGU-GCGUCGcG- -5'
2019 3' -60.5 NC_001347.2 + 139533 0.69 0.648315
Target:  5'- aGCCGaCgaGGUCucgcuGGAuGCGCGCAGCGCu -3'
miRNA:   3'- cUGGC-GggCUAG-----CCU-CGUGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 90893 0.69 0.648315
Target:  5'- cGGCCGCCaaGAUCcaGGAGCgcuACGCggagcugcagaAGCGCa -3'
miRNA:   3'- -CUGGCGGg-CUAG--CCUCG---UGCG-----------UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 194422 0.69 0.648315
Target:  5'- aGCCGCgCGAgcgugcgagCGGGGUucaccUGCAGCGCu -3'
miRNA:   3'- cUGGCGgGCUa--------GCCUCGu----GCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 15365 0.69 0.648315
Target:  5'- cGuuGCCCGAU--GAGCgACGCgAGCGCg -3'
miRNA:   3'- cUggCGGGCUAgcCUCG-UGCG-UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 100951 0.69 0.667551
Target:  5'- cGCCGCCgCGAU-GGAGaaCugGuCGGCGCu -3'
miRNA:   3'- cUGGCGG-GCUAgCCUC--GugC-GUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 172682 0.69 0.667551
Target:  5'- aGACgCGCCUc-UCGGAGCcgccgACGCuGGCGCu -3'
miRNA:   3'- -CUG-GCGGGcuAGCCUCG-----UGCG-UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 125319 0.69 0.667551
Target:  5'- aGCCGCgCCGGccUC-GAGCAUGUAcGCGCu -3'
miRNA:   3'- cUGGCG-GGCU--AGcCUCGUGCGU-CGCG- -5'
2019 3' -60.5 NC_001347.2 + 85510 0.69 0.677135
Target:  5'- gGGCgGCuuGAgCGG-GCGCGC-GCGCu -3'
miRNA:   3'- -CUGgCGggCUaGCCuCGUGCGuCGCG- -5'
2019 3' -60.5 NC_001347.2 + 155541 0.69 0.677135
Target:  5'- cGACCGCUggugaucgaCGAggacgCGGAGCcCGCGGCu- -3'
miRNA:   3'- -CUGGCGG---------GCUa----GCCUCGuGCGUCGcg -5'
2019 3' -60.5 NC_001347.2 + 2140 0.69 0.677135
Target:  5'- gGACgCGCacgcggUGGUCGGGGCggACGCGGCaGCa -3'
miRNA:   3'- -CUG-GCGg-----GCUAGCCUCG--UGCGUCG-CG- -5'
2019 3' -60.5 NC_001347.2 + 87576 0.69 0.677135
Target:  5'- aGACagcaGCCCGuggcCGuGAGCAgacCGCGGUGCa -3'
miRNA:   3'- -CUGg---CGGGCua--GC-CUCGU---GCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 136329 0.69 0.677135
Target:  5'- cGGCCGCCCaGUggaaaaauacCGGcGCAUGCgcacGGCGCa -3'
miRNA:   3'- -CUGGCGGGcUA----------GCCuCGUGCG----UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.