miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2019 3' -60.5 NC_001347.2 + 187456 0.67 0.778729
Target:  5'- cGugCGCCaCGAUgccgagaucgUGGAacGCGCGCucguaAGCGCg -3'
miRNA:   3'- -CugGCGG-GCUA----------GCCU--CGUGCG-----UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 105980 0.67 0.769923
Target:  5'- cGCaCGCCCGcgCGGccgcAGCACGUGuCGCc -3'
miRNA:   3'- cUG-GCGGGCuaGCC----UCGUGCGUcGCG- -5'
2019 3' -60.5 NC_001347.2 + 81684 0.67 0.761008
Target:  5'- gGGCaCG-CCGAgCGaGAGCGCGCAGgGUu -3'
miRNA:   3'- -CUG-GCgGGCUaGC-CUCGUGCGUCgCG- -5'
2019 3' -60.5 NC_001347.2 + 94996 0.67 0.761008
Target:  5'- cGCUGCCCaGAUCacacaGGugcguGCGaaaGCAGCGCg -3'
miRNA:   3'- cUGGCGGG-CUAG-----CCu----CGUg--CGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 38741 0.67 0.751991
Target:  5'- --aCGUCUG-UCGGAGCGCcggcugaggcaGCAGCGUc -3'
miRNA:   3'- cugGCGGGCuAGCCUCGUG-----------CGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 153319 0.67 0.749268
Target:  5'- uGGCCaGCUCGcguuggcggcgcuugCGGAGCAgGgAGCGCa -3'
miRNA:   3'- -CUGG-CGGGCua-------------GCCUCGUgCgUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 14113 0.67 0.749268
Target:  5'- --aCGUCgCGAacgacggugaaaaaUCGGAGCAcuuucCGCGGCGCu -3'
miRNA:   3'- cugGCGG-GCU--------------AGCCUCGU-----GCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 151073 0.67 0.749268
Target:  5'- cGCCGCCagcaucacgcgcauCGGUCGcgacaugcuaGAGCGCaCGGCGCg -3'
miRNA:   3'- cUGGCGG--------------GCUAGC----------CUCGUGcGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 198874 0.67 0.742881
Target:  5'- aGCCGCugcagguuuugCCGAUagaGGuagAGCGCGCcGCGCg -3'
miRNA:   3'- cUGGCG-----------GGCUAg--CC---UCGUGCGuCGCG- -5'
2019 3' -60.5 NC_001347.2 + 184893 0.67 0.742881
Target:  5'- gGGCCGUgaaaaccagCUGGUUGaaGAGCGCGCAcacGCGCg -3'
miRNA:   3'- -CUGGCG---------GGCUAGC--CUCGUGCGU---CGCG- -5'
2019 3' -60.5 NC_001347.2 + 66782 0.67 0.742881
Target:  5'- -uCCGCCCGA-CGGugguGGCG-GCGGCGg -3'
miRNA:   3'- cuGGCGGGCUaGCC----UCGUgCGUCGCg -5'
2019 3' -60.5 NC_001347.2 + 142980 0.68 0.733685
Target:  5'- -gUCGCCCGAggcggaGGAGCcgGCGgCGGCGg -3'
miRNA:   3'- cuGGCGGGCUag----CCUCG--UGC-GUCGCg -5'
2019 3' -60.5 NC_001347.2 + 208039 0.68 0.733685
Target:  5'- gGACCGa-CG-UCGGAGU-CGCGGCGUu -3'
miRNA:   3'- -CUGGCggGCuAGCCUCGuGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 111241 0.68 0.724411
Target:  5'- --gCGCgCCGGUcucuuuccaCGGAGCaacgucauGCGCGGCGCc -3'
miRNA:   3'- cugGCG-GGCUA---------GCCUCG--------UGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 159461 0.68 0.715066
Target:  5'- cGGCCGCUCGAugacgaugUCGGcGCG-GCGGCuGCu -3'
miRNA:   3'- -CUGGCGGGCU--------AGCCuCGUgCGUCG-CG- -5'
2019 3' -60.5 NC_001347.2 + 110477 0.68 0.71225
Target:  5'- gGACCgcguGCCCGuuagCGGAcuGCACcucuuucagagccaGCGGCGCg -3'
miRNA:   3'- -CUGG----CGGGCua--GCCU--CGUG--------------CGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 157612 0.68 0.705658
Target:  5'- -cCCGCCCGAgCGGcuGCACGCGuUGUu -3'
miRNA:   3'- cuGGCGGGCUaGCCu-CGUGCGUcGCG- -5'
2019 3' -60.5 NC_001347.2 + 78657 0.68 0.705658
Target:  5'- cACCuGCCCGuGUUGGAggccGUGCGCAagGCGCg -3'
miRNA:   3'- cUGG-CGGGC-UAGCCU----CGUGCGU--CGCG- -5'
2019 3' -60.5 NC_001347.2 + 39501 0.68 0.705658
Target:  5'- cGGCCGCgaCCaagGggCGGGGgGCGCGGCGa -3'
miRNA:   3'- -CUGGCG--GG---CuaGCCUCgUGCGUCGCg -5'
2019 3' -60.5 NC_001347.2 + 99570 0.68 0.696196
Target:  5'- uGACCcgcGCUCGucGUCgGGAGCGCGguggaagaCAGCGCg -3'
miRNA:   3'- -CUGG---CGGGC--UAG-CCUCGUGC--------GUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.