miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2019 3' -60.5 NC_001347.2 + 909 0.67 0.787418
Target:  5'- -cCCGCCCcuuGGUCGcGGC-CGCGGgGCc -3'
miRNA:   3'- cuGGCGGG---CUAGCcUCGuGCGUCgCG- -5'
2019 3' -60.5 NC_001347.2 + 1930 0.73 0.43552
Target:  5'- uGCUGCCCGcgCGGuGGCugGgCuGCGCg -3'
miRNA:   3'- cUGGCGGGCuaGCC-UCGugC-GuCGCG- -5'
2019 3' -60.5 NC_001347.2 + 2025 0.71 0.524428
Target:  5'- aGGCCGCCgG--CGGGGaCGCGCcguGCGCg -3'
miRNA:   3'- -CUGGCGGgCuaGCCUC-GUGCGu--CGCG- -5'
2019 3' -60.5 NC_001347.2 + 2140 0.69 0.677135
Target:  5'- gGACgCGCacgcggUGGUCGGGGCggACGCGGCaGCa -3'
miRNA:   3'- -CUG-GCGg-----GCUAGCCUCG--UGCGUCG-CG- -5'
2019 3' -60.5 NC_001347.2 + 2421 0.66 0.8367
Target:  5'- uGCUGCCCGAgcuggacCGcGAGCAgugggaGCGGcCGCg -3'
miRNA:   3'- cUGGCGGGCUa------GC-CUCGUg-----CGUC-GCG- -5'
2019 3' -60.5 NC_001347.2 + 14113 0.67 0.749268
Target:  5'- --aCGUCgCGAacgacggugaaaaaUCGGAGCAcuuucCGCGGCGCu -3'
miRNA:   3'- cugGCGG-GCU--------------AGCCUCGU-----GCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 15365 0.69 0.648315
Target:  5'- cGuuGCCCGAU--GAGCgACGCgAGCGCg -3'
miRNA:   3'- cUggCGGGCUAgcCUCG-UGCG-UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 18734 0.67 0.787418
Target:  5'- uGCCGCUuCGAccgCGGAuuGCGCGGCGa -3'
miRNA:   3'- cUGGCGG-GCUa--GCCUcgUGCGUCGCg -5'
2019 3' -60.5 NC_001347.2 + 19762 0.72 0.461322
Target:  5'- uGCCGCaCCGGUUGGAGCA-GCucuuuuccAGCGUg -3'
miRNA:   3'- cUGGCG-GGCUAGCCUCGUgCG--------UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 37621 0.7 0.600143
Target:  5'- gGACuCGUcaUCGuAUCGGAGCGCGUAGCu- -3'
miRNA:   3'- -CUG-GCG--GGC-UAGCCUCGUGCGUCGcg -5'
2019 3' -60.5 NC_001347.2 + 37907 0.73 0.41879
Target:  5'- cACUGCCCGugcggcUCGGcGCccacaGCGCGGCGCg -3'
miRNA:   3'- cUGGCGGGCu-----AGCCuCG-----UGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 38741 0.67 0.751991
Target:  5'- --aCGUCUG-UCGGAGCGCcggcugaggcaGCAGCGUc -3'
miRNA:   3'- cugGCGGGCuAGCCUCGUG-----------CGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 39131 0.71 0.551542
Target:  5'- cGGCCGUCCGAgCGGcAGCAgcgugccCGCGucGCGCu -3'
miRNA:   3'- -CUGGCGGGCUaGCC-UCGU-------GCGU--CGCG- -5'
2019 3' -60.5 NC_001347.2 + 39501 0.68 0.705658
Target:  5'- cGGCCGCgaCCaagGggCGGGGgGCGCGGCGa -3'
miRNA:   3'- -CUGGCG--GG---CuaGCCUCgUGCGUCGCg -5'
2019 3' -60.5 NC_001347.2 + 40391 0.66 0.8367
Target:  5'- cACCG-CCGGUgCGGGGCcGCGUGGUGg -3'
miRNA:   3'- cUGGCgGGCUA-GCCUCG-UGCGUCGCg -5'
2019 3' -60.5 NC_001347.2 + 65803 0.72 0.487908
Target:  5'- -uCCGCCCGAgcaGGuGCGCGUGGUGa -3'
miRNA:   3'- cuGGCGGGCUag-CCuCGUGCGUCGCg -5'
2019 3' -60.5 NC_001347.2 + 66782 0.67 0.742881
Target:  5'- -uCCGCCCGA-CGGugguGGCG-GCGGCGg -3'
miRNA:   3'- cuGGCGGGCUaGCC----UCGUgCGUCGCg -5'
2019 3' -60.5 NC_001347.2 + 75072 0.77 0.256913
Target:  5'- cGACCGCCCGugagaCGcugcauGAGCugGUAGCGCu -3'
miRNA:   3'- -CUGGCGGGCua---GC------CUCGugCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 77515 0.71 0.561941
Target:  5'- cGGCgCGUggCCGAggagUGGAaguuGCACGCGGCGCu -3'
miRNA:   3'- -CUG-GCG--GGCUa---GCCU----CGUGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 77933 0.66 0.820864
Target:  5'- gGugCGCUCGGagCGGcuggaGGCGCaGCuGCGCg -3'
miRNA:   3'- -CugGCGGGCUa-GCC-----UCGUG-CGuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.