miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2019 3' -60.5 NC_001347.2 + 78657 0.68 0.705658
Target:  5'- cACCuGCCCGuGUUGGAggccGUGCGCAagGCGCg -3'
miRNA:   3'- cUGG-CGGGC-UAGCCU----CGUGCGU--CGCG- -5'
2019 3' -60.5 NC_001347.2 + 79160 0.69 0.629034
Target:  5'- cGCCGCuuGAUCacggcagacgaGGAGCGgCGCGGCcCa -3'
miRNA:   3'- cUGGCGggCUAG-----------CCUCGU-GCGUCGcG- -5'
2019 3' -60.5 NC_001347.2 + 81019 0.66 0.819245
Target:  5'- aACCGCUCG-UCGccccagaccaacAGCACGCcgGGCGCg -3'
miRNA:   3'- cUGGCGGGCuAGCc-----------UCGUGCG--UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 81684 0.67 0.761008
Target:  5'- gGGCaCG-CCGAgCGaGAGCGCGCAGgGUu -3'
miRNA:   3'- -CUG-GCgGGCUaGC-CUCGUGCGUCgCG- -5'
2019 3' -60.5 NC_001347.2 + 82476 0.68 0.685732
Target:  5'- aGGCCGCgCCGAcgcucaUCGGcguccguagucacGGCcgaggccaGCGCAGCGUa -3'
miRNA:   3'- -CUGGCG-GGCU------AGCC-------------UCG--------UGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 82800 0.7 0.584801
Target:  5'- cGACCGCCCgGAcgugcucaaaccgcgUCGuGAGCGCgGCGGCu- -3'
miRNA:   3'- -CUGGCGGG-CU---------------AGC-CUCGUG-CGUCGcg -5'
2019 3' -60.5 NC_001347.2 + 85510 0.69 0.677135
Target:  5'- gGGCgGCuuGAgCGG-GCGCGC-GCGCu -3'
miRNA:   3'- -CUGgCGggCUaGCCuCGUGCGuCGCG- -5'
2019 3' -60.5 NC_001347.2 + 87069 0.66 0.801902
Target:  5'- aGACCGCgCCGGUCcaacagccgcaugaGGcaaaagcccAGCACGUuacccAGCGCc -3'
miRNA:   3'- -CUGGCG-GGCUAG--------------CC---------UCGUGCG-----UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 87243 0.66 0.8367
Target:  5'- aGACgGUgCGAgcagUUGGGG-AUGCGGCGCg -3'
miRNA:   3'- -CUGgCGgGCU----AGCCUCgUGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 87576 0.69 0.677135
Target:  5'- aGACagcaGCCCGuggcCGuGAGCAgacCGCGGUGCa -3'
miRNA:   3'- -CUGg---CGGGCua--GC-CUCGU---GCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 88341 0.66 0.828861
Target:  5'- aGCCGUgguaaCCG-UCGccGCugGCGGCGCu -3'
miRNA:   3'- cUGGCG-----GGCuAGCcuCGugCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 88617 0.66 0.8367
Target:  5'- cGGCgGCCUGcgCGGccuGCAcCGCGGCu- -3'
miRNA:   3'- -CUGgCGGGCuaGCCu--CGU-GCGUCGcg -5'
2019 3' -60.5 NC_001347.2 + 90893 0.69 0.648315
Target:  5'- cGGCCGCCaaGAUCcaGGAGCgcuACGCggagcugcagaAGCGCa -3'
miRNA:   3'- -CUGGCGGg-CUAG--CCUCG---UGCG-----------UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 94996 0.67 0.761008
Target:  5'- cGCUGCCCaGAUCacacaGGugcguGCGaaaGCAGCGCg -3'
miRNA:   3'- cUGGCGGG-CUAG-----CCu----CGUg--CGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 99570 0.68 0.696196
Target:  5'- uGACCcgcGCUCGucGUCgGGAGCGCGguggaagaCAGCGCg -3'
miRNA:   3'- -CUGG---CGGGC--UAG-CCUCGUGC--------GUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 100765 0.68 0.695247
Target:  5'- -cUCGCCCG-UCGauagcucuuggguGAGguUGCAGCGCg -3'
miRNA:   3'- cuGGCGGGCuAGC-------------CUCguGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 100861 0.66 0.820864
Target:  5'- aGAgCGUcacagCCGAggCGGcGCgGCGCAGCGCc -3'
miRNA:   3'- -CUgGCG-----GGCUa-GCCuCG-UGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 100951 0.69 0.667551
Target:  5'- cGCCGCCgCGAU-GGAGaaCugGuCGGCGCu -3'
miRNA:   3'- cUGGCGG-GCUAgCCUC--GugC-GUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 104338 0.73 0.43552
Target:  5'- gGACCGCUgGAUCcG-GCACGCGGCcgGCg -3'
miRNA:   3'- -CUGGCGGgCUAGcCuCGUGCGUCG--CG- -5'
2019 3' -60.5 NC_001347.2 + 105980 0.67 0.769923
Target:  5'- cGCaCGCCCGcgCGGccgcAGCACGUGuCGCc -3'
miRNA:   3'- cUG-GCGGGCuaGCC----UCGUGCGUcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.