miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2019 3' -60.5 NC_001347.2 + 110477 0.68 0.71225
Target:  5'- gGACCgcguGCCCGuuagCGGAcuGCACcucuuucagagccaGCGGCGCg -3'
miRNA:   3'- -CUGG----CGGGCua--GCCU--CGUG--------------CGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 111241 0.68 0.724411
Target:  5'- --gCGCgCCGGUcucuuuccaCGGAGCaacgucauGCGCGGCGCc -3'
miRNA:   3'- cugGCG-GGCUA---------GCCUCG--------UGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 113409 0.72 0.460449
Target:  5'- gGAUCGCCCGAcgcgUCGacAGCAgugcugcCGCAGCGCu -3'
miRNA:   3'- -CUGGCGGGCU----AGCc-UCGU-------GCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 118232 0.7 0.600143
Target:  5'- aACCGCCgaagcacgCGcUCGGGGCAgCGCAGCa- -3'
miRNA:   3'- cUGGCGG--------GCuAGCCUCGU-GCGUCGcg -5'
2019 3' -60.5 NC_001347.2 + 125319 0.69 0.667551
Target:  5'- aGCCGCgCCGGccUC-GAGCAUGUAcGCGCu -3'
miRNA:   3'- cUGGCG-GGCU--AGcCUCGUGCGU-CGCG- -5'
2019 3' -60.5 NC_001347.2 + 126178 0.67 0.787418
Target:  5'- -cUCGCCCGAacaCGGcGGCGaGguGCGCg -3'
miRNA:   3'- cuGGCGGGCUa--GCC-UCGUgCguCGCG- -5'
2019 3' -60.5 NC_001347.2 + 126633 0.66 0.812713
Target:  5'- uGGCCuaCCGcaCGGcGCugGCAcGCGCg -3'
miRNA:   3'- -CUGGcgGGCuaGCCuCGugCGU-CGCG- -5'
2019 3' -60.5 NC_001347.2 + 126863 0.66 0.803581
Target:  5'- cGACCaGCCCGcacggcUUGGGGCugGCcggcuacGGCGg -3'
miRNA:   3'- -CUGG-CGGGCu-----AGCCUCGugCG-------UCGCg -5'
2019 3' -60.5 NC_001347.2 + 129470 0.73 0.427106
Target:  5'- aGCCGUuuGAUCGaaaagaaaaaaaGAGCGCgucuGCAGCGCg -3'
miRNA:   3'- cUGGCGggCUAGC------------CUCGUG----CGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 136012 0.71 0.561941
Target:  5'- -cCCGgCCGAggucCGGAGCGgGCcGCGCc -3'
miRNA:   3'- cuGGCgGGCUa---GCCUCGUgCGuCGCG- -5'
2019 3' -60.5 NC_001347.2 + 136329 0.69 0.677135
Target:  5'- cGGCCGCCCaGUggaaaaauacCGGcGCAUGCgcacGGCGCa -3'
miRNA:   3'- -CUGGCGGGcUA----------GCCuCGUGCG----UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 139533 0.69 0.648315
Target:  5'- aGCCGaCgaGGUCucgcuGGAuGCGCGCAGCGCu -3'
miRNA:   3'- cUGGC-GggCUAG-----CCU-CGUGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 142383 0.67 0.787418
Target:  5'- cGCCGCCgGGggGGAgguGCACGaccuguCGGCGCu -3'
miRNA:   3'- cUGGCGGgCUagCCU---CGUGC------GUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 142980 0.68 0.733685
Target:  5'- -gUCGCCCGAggcggaGGAGCcgGCGgCGGCGg -3'
miRNA:   3'- cuGGCGGGCUag----CCUCG--UGC-GUCGCg -5'
2019 3' -60.5 NC_001347.2 + 151073 0.67 0.749268
Target:  5'- cGCCGCCagcaucacgcgcauCGGUCGcgacaugcuaGAGCGCaCGGCGCg -3'
miRNA:   3'- cUGGCGG--------------GCUAGC----------CUCGUGcGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 153319 0.67 0.749268
Target:  5'- uGGCCaGCUCGcguuggcggcgcuugCGGAGCAgGgAGCGCa -3'
miRNA:   3'- -CUGG-CGGGCua-------------GCCUCGUgCgUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 155541 0.69 0.677135
Target:  5'- cGACCGCUggugaucgaCGAggacgCGGAGCcCGCGGCu- -3'
miRNA:   3'- -CUGGCGG---------GCUa----GCCUCGuGCGUCGcg -5'
2019 3' -60.5 NC_001347.2 + 157612 0.68 0.705658
Target:  5'- -cCCGCCCGAgCGGcuGCACGCGuUGUu -3'
miRNA:   3'- cuGGCGGGCUaGCCu-CGUGCGUcGCG- -5'
2019 3' -60.5 NC_001347.2 + 158698 0.71 0.51888
Target:  5'- aGACCGCCUGccacgucggCGGccacauugugcagcaGGCGCGCGGCGg -3'
miRNA:   3'- -CUGGCGGGCua-------GCC---------------UCGUGCGUCGCg -5'
2019 3' -60.5 NC_001347.2 + 159461 0.68 0.715066
Target:  5'- cGGCCGCUCGAugacgaugUCGGcGCG-GCGGCuGCu -3'
miRNA:   3'- -CUGGCGGGCU--------AGCCuCGUgCGUCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.