miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2019 3' -60.5 NC_001347.2 + 208103 0.66 0.795984
Target:  5'- uGGgCGCaCCGAcggCGGAGC-CGCgucgcucgccGGCGCu -3'
miRNA:   3'- -CUgGCG-GGCUa--GCCUCGuGCG----------UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 208039 0.68 0.733685
Target:  5'- gGACCGa-CG-UCGGAGU-CGCGGCGUu -3'
miRNA:   3'- -CUGGCggGCuAGCCUCGuGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 198874 0.67 0.742881
Target:  5'- aGCCGCugcagguuuugCCGAUagaGGuagAGCGCGCcGCGCg -3'
miRNA:   3'- cUGGCG-----------GGCUAg--CC---UCGUGCGuCGCG- -5'
2019 3' -60.5 NC_001347.2 + 197654 0.66 0.804418
Target:  5'- cGGCCuGCUacacagcuacuuUGAagacgUGGAGCGCGCuGCGCa -3'
miRNA:   3'- -CUGG-CGG------------GCUa----GCCUCGUGCGuCGCG- -5'
2019 3' -60.5 NC_001347.2 + 197153 0.71 0.524428
Target:  5'- cGCCGCCC---CGGGGCccuCGguGCGCu -3'
miRNA:   3'- cUGGCGGGcuaGCCUCGu--GCguCGCG- -5'
2019 3' -60.5 NC_001347.2 + 196977 0.71 0.524428
Target:  5'- --aCGCCCGAgaCGGcGCGCGUccAGCGCc -3'
miRNA:   3'- cugGCGGGCUa-GCCuCGUGCG--UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 196369 0.71 0.540266
Target:  5'- cACCauuCCCGuUUGGAGCACGCcgagcugaggcuggAGCGCa -3'
miRNA:   3'- cUGGc--GGGCuAGCCUCGUGCG--------------UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 195863 0.71 0.546835
Target:  5'- uGCCGCCCGAUCcGcAGCauuuucgcuggcucaACGCcGGCGCu -3'
miRNA:   3'- cUGGCGGGCUAGcC-UCG---------------UGCG-UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 194422 0.69 0.648315
Target:  5'- aGCCGCgCGAgcgugcgagCGGGGUucaccUGCAGCGCu -3'
miRNA:   3'- cUGGCGgGCUa--------GCCUCGu----GCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 191203 0.66 0.812713
Target:  5'- -cCCGCaacgCCGcUCGGAGCAccgcCGCAGCccgGCu -3'
miRNA:   3'- cuGGCG----GGCuAGCCUCGU----GCGUCG---CG- -5'
2019 3' -60.5 NC_001347.2 + 189842 0.72 0.470101
Target:  5'- cGACCGCCCucGGUCcccguGAGCG-GUAGCGCg -3'
miRNA:   3'- -CUGGCGGG--CUAGc----CUCGUgCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 187456 0.67 0.778729
Target:  5'- cGugCGCCaCGAUgccgagaucgUGGAacGCGCGCucguaAGCGCg -3'
miRNA:   3'- -CugGCGG-GCUA----------GCCU--CGUGCG-----UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 184893 0.67 0.742881
Target:  5'- gGGCCGUgaaaaccagCUGGUUGaaGAGCGCGCAcacGCGCg -3'
miRNA:   3'- -CUGGCG---------GGCUAGC--CUCGUGCGU---CGCG- -5'
2019 3' -60.5 NC_001347.2 + 183470 0.66 0.812713
Target:  5'- aGCgCGCCuCGGccUCGGGagacGCGCGCAGCcccaGCg -3'
miRNA:   3'- cUG-GCGG-GCU--AGCCU----CGUGCGUCG----CG- -5'
2019 3' -60.5 NC_001347.2 + 180271 0.7 0.57144
Target:  5'- cGACCGCagCGGUggcUGGAGaaGCGCAGCGUc -3'
miRNA:   3'- -CUGGCGg-GCUA---GCCUCg-UGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 176621 0.7 0.600143
Target:  5'- gGAUUGCCCGGcccagaCGGuGCacgGCGCGGCGUa -3'
miRNA:   3'- -CUGGCGGGCUa-----GCCuCG---UGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 175000 0.73 0.444029
Target:  5'- gGGCCGUgCCGGU-GGAGuCGCaGCAGCGCc -3'
miRNA:   3'- -CUGGCG-GGCUAgCCUC-GUG-CGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 174160 0.72 0.470101
Target:  5'- -cCCGCgCgGAUCGGAcacuuuagGCgGCGCAGCGCc -3'
miRNA:   3'- cuGGCG-GgCUAGCCU--------CG-UGCGUCGCG- -5'
2019 3' -60.5 NC_001347.2 + 172682 0.69 0.667551
Target:  5'- aGACgCGCCUc-UCGGAGCcgccgACGCuGGCGCu -3'
miRNA:   3'- -CUG-GCGGGcuAGCCUCG-----UGCG-UCGCG- -5'
2019 3' -60.5 NC_001347.2 + 170385 0.7 0.590546
Target:  5'- uGCCGUCCGAcaGGAaCGCGCuguGGCGCg -3'
miRNA:   3'- cUGGCGGGCUagCCUcGUGCG---UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.