Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2019 | 3' | -60.5 | NC_001347.2 | + | 75072 | 0.77 | 0.256913 |
Target: 5'- cGACCGCCCGugagaCGcugcauGAGCugGUAGCGCu -3' miRNA: 3'- -CUGGCGGGCua---GC------CUCGugCGUCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 197654 | 0.66 | 0.804418 |
Target: 5'- cGGCCuGCUacacagcuacuuUGAagacgUGGAGCGCGCuGCGCa -3' miRNA: 3'- -CUGG-CGG------------GCUa----GCCUCGUGCGuCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 87069 | 0.66 | 0.801902 |
Target: 5'- aGACCGCgCCGGUCcaacagccgcaugaGGcaaaagcccAGCACGUuacccAGCGCc -3' miRNA: 3'- -CUGGCG-GGCUAG--------------CC---------UCGUGCG-----UCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 142383 | 0.67 | 0.787418 |
Target: 5'- cGCCGCCgGGggGGAgguGCACGaccuguCGGCGCu -3' miRNA: 3'- cUGGCGGgCUagCCU---CGUGC------GUCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 126863 | 0.66 | 0.803581 |
Target: 5'- cGACCaGCCCGcacggcUUGGGGCugGCcggcuacGGCGg -3' miRNA: 3'- -CUGG-CGGGCu-----AGCCUCGugCG-------UCGCg -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 208103 | 0.66 | 0.795984 |
Target: 5'- uGGgCGCaCCGAcggCGGAGC-CGCgucgcucgccGGCGCu -3' miRNA: 3'- -CUgGCG-GGCUa--GCCUCGuGCG----------UCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 126178 | 0.67 | 0.787418 |
Target: 5'- -cUCGCCCGAacaCGGcGGCGaGguGCGCg -3' miRNA: 3'- cuGGCGGGCUa--GCC-UCGUgCguCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 18734 | 0.67 | 0.787418 |
Target: 5'- uGCCGCUuCGAccgCGGAuuGCGCGGCGa -3' miRNA: 3'- cUGGCGG-GCUa--GCCUcgUGCGUCGCg -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 909 | 0.67 | 0.787418 |
Target: 5'- -cCCGCCCcuuGGUCGcGGC-CGCGGgGCc -3' miRNA: 3'- cuGGCGGG---CUAGCcUCGuGCGUCgCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 126633 | 0.66 | 0.812713 |
Target: 5'- uGGCCuaCCGcaCGGcGCugGCAcGCGCg -3' miRNA: 3'- -CUGGcgGGCuaGCCuCGugCGU-CGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 183470 | 0.66 | 0.812713 |
Target: 5'- aGCgCGCCuCGGccUCGGGagacGCGCGCAGCcccaGCg -3' miRNA: 3'- cUG-GCGG-GCU--AGCCU----CGUGCGUCG----CG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 81019 | 0.66 | 0.819245 |
Target: 5'- aACCGCUCG-UCGccccagaccaacAGCACGCcgGGCGCg -3' miRNA: 3'- cUGGCGGGCuAGCc-----------UCGUGCG--UCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 159792 | 0.66 | 0.8367 |
Target: 5'- aGCCGUCUGAUUuGGGCuuguagccaGCAGUGCu -3' miRNA: 3'- cUGGCGGGCUAGcCUCGug-------CGUCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 88341 | 0.66 | 0.828861 |
Target: 5'- aGCCGUgguaaCCG-UCGccGCugGCGGCGCu -3' miRNA: 3'- cUGGCG-----GGCuAGCcuCGugCGUCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 2421 | 0.66 | 0.8367 |
Target: 5'- uGCUGCCCGAgcuggacCGcGAGCAgugggaGCGGcCGCg -3' miRNA: 3'- cUGGCGGGCUa------GC-CUCGUg-----CGUC-GCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 87243 | 0.66 | 0.8367 |
Target: 5'- aGACgGUgCGAgcagUUGGGG-AUGCGGCGCg -3' miRNA: 3'- -CUGgCGgGCU----AGCCUCgUGCGUCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 88617 | 0.66 | 0.8367 |
Target: 5'- cGGCgGCCUGcgCGGccuGCAcCGCGGCu- -3' miRNA: 3'- -CUGgCGGGCuaGCCu--CGU-GCGUCGcg -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 77933 | 0.66 | 0.820864 |
Target: 5'- gGugCGCUCGGagCGGcuggaGGCGCaGCuGCGCg -3' miRNA: 3'- -CugGCGGGCUa-GCC-----UCGUG-CGuCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 100861 | 0.66 | 0.820864 |
Target: 5'- aGAgCGUcacagCCGAggCGGcGCgGCGCAGCGCc -3' miRNA: 3'- -CUgGCG-----GGCUa-GCCuCG-UGCGUCGCG- -5' |
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2019 | 3' | -60.5 | NC_001347.2 | + | 191203 | 0.66 | 0.812713 |
Target: 5'- -cCCGCaacgCCGcUCGGAGCAccgcCGCAGCccgGCu -3' miRNA: 3'- cuGGCG----GGCuAGCCUCGU----GCGUCG---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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