miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20221 5' -54.8 NC_004687.1 + 117663 0.66 0.94814
Target:  5'- cGCAuccGCUGcUCACgCUcCGACGGCGUCUc -3'
miRNA:   3'- -CGU---CGACuAGUG-GAaGCUGCCGUGGA- -5'
20221 5' -54.8 NC_004687.1 + 88626 0.66 0.94814
Target:  5'- uGCAGCUGGUCgguGCCgaaGugGuuGCCg -3'
miRNA:   3'- -CGUCGACUAG---UGGaagCugCcgUGGa -5'
20221 5' -54.8 NC_004687.1 + 138898 0.66 0.94814
Target:  5'- aGCAGCcGGUaCugCUucagcgcgaccUCGGCGGCAUg- -3'
miRNA:   3'- -CGUCGaCUA-GugGA-----------AGCUGCCGUGga -5'
20221 5' -54.8 NC_004687.1 + 89273 0.66 0.945514
Target:  5'- gGCAGCUggaaagcgggccgacGAcCACCcagCGACGGCugUa -3'
miRNA:   3'- -CGUCGA---------------CUaGUGGaa-GCUGCCGugGa -5'
20221 5' -54.8 NC_004687.1 + 102584 0.66 0.943715
Target:  5'- aGCAGCgcgcGggCcCCggCGGCGGCACa- -3'
miRNA:   3'- -CGUCGa---CuaGuGGaaGCUGCCGUGga -5'
20221 5' -54.8 NC_004687.1 + 112919 0.66 0.943715
Target:  5'- cGUA-CUGGUCGCUgggaugccagUCGGgGGCGCCg -3'
miRNA:   3'- -CGUcGACUAGUGGa---------AGCUgCCGUGGa -5'
20221 5' -54.8 NC_004687.1 + 43719 0.66 0.943715
Target:  5'- aGguGaUGAUCGCCaagGGCGGUGCCUu -3'
miRNA:   3'- -CguCgACUAGUGGaagCUGCCGUGGA- -5'
20221 5' -54.8 NC_004687.1 + 26590 0.66 0.943715
Target:  5'- -aAGCUGcgCGCCgggugaCGACGGCAa-- -3'
miRNA:   3'- cgUCGACuaGUGGaa----GCUGCCGUgga -5'
20221 5' -54.8 NC_004687.1 + 153054 0.66 0.943715
Target:  5'- cGCAGUcgUGGUCGCacUCGGC-GCACCc -3'
miRNA:   3'- -CGUCG--ACUAGUGgaAGCUGcCGUGGa -5'
20221 5' -54.8 NC_004687.1 + 9626 0.66 0.943715
Target:  5'- -gAGCUGG-CACCUgaccucCGugGGUAUCa -3'
miRNA:   3'- cgUCGACUaGUGGAa-----GCugCCGUGGa -5'
20221 5' -54.8 NC_004687.1 + 115719 0.66 0.94326
Target:  5'- uGCAGUaccgcgaUGGUCuguggGCCUcUGACGGCugCa -3'
miRNA:   3'- -CGUCG-------ACUAG-----UGGAaGCUGCCGugGa -5'
20221 5' -54.8 NC_004687.1 + 20367 0.66 0.939529
Target:  5'- cGCAuGCgu-UCACCaagcccgccgcccaCGGCGGCACCUg -3'
miRNA:   3'- -CGU-CGacuAGUGGaa------------GCUGCCGUGGA- -5'
20221 5' -54.8 NC_004687.1 + 53621 0.66 0.939051
Target:  5'- -aAGgUGAUCGCCga-GucCGGCGCCa -3'
miRNA:   3'- cgUCgACUAGUGGaagCu-GCCGUGGa -5'
20221 5' -54.8 NC_004687.1 + 143791 0.66 0.939051
Target:  5'- cCAGCUGGcaGCCUcguccaucCGGuCGGCGCCUg -3'
miRNA:   3'- cGUCGACUagUGGAa-------GCU-GCCGUGGA- -5'
20221 5' -54.8 NC_004687.1 + 6933 0.66 0.939051
Target:  5'- cGCAGCUGcccUCGCCgUUGcCGGUGuCCUg -3'
miRNA:   3'- -CGUCGACu--AGUGGaAGCuGCCGU-GGA- -5'
20221 5' -54.8 NC_004687.1 + 111932 0.66 0.939051
Target:  5'- uCAGCcgGA-CACCUUCGACGcCGuCCUg -3'
miRNA:   3'- cGUCGa-CUaGUGGAAGCUGCcGU-GGA- -5'
20221 5' -54.8 NC_004687.1 + 50924 0.66 0.938572
Target:  5'- -gAGCUGAUCGacauCCcgUCGACGGacaagauCACCa -3'
miRNA:   3'- cgUCGACUAGU----GGa-AGCUGCC-------GUGGa -5'
20221 5' -54.8 NC_004687.1 + 88928 0.66 0.934146
Target:  5'- -gGGC-GGUCACCcacgucaagUCGAcCGGCGCCc -3'
miRNA:   3'- cgUCGaCUAGUGGa--------AGCU-GCCGUGGa -5'
20221 5' -54.8 NC_004687.1 + 152451 0.66 0.934146
Target:  5'- cGCAGCggguaaGUCgACCUUCGACuaCACCg -3'
miRNA:   3'- -CGUCGac----UAG-UGGAAGCUGccGUGGa -5'
20221 5' -54.8 NC_004687.1 + 81115 0.66 0.934146
Target:  5'- uGCAGCUGG-CAC--UCGACGaGUcgGCCUa -3'
miRNA:   3'- -CGUCGACUaGUGgaAGCUGC-CG--UGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.