Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2023 | 5' | -56.9 | NC_001347.2 | + | 42355 | 0.66 | 0.914587 |
|
Target: 5'- -uGGCGCGGugUCGUGACA---GGAGa -3' miRNA: 3'- uuUCGCGUCugGGUACUGUcggCCUC- -5' |
|||||||
| 2023 | 5' | -56.9 | NC_001347.2 | + | 136103 | 0.66 | 0.914587 |
|
Target: 5'- -cGGCGcCGGGCCU----CGGCCGGGGa -3' miRNA: 3'- uuUCGC-GUCUGGGuacuGUCGGCCUC- -5' |
|||||||
| 2023 | 5' | -56.9 | NC_001347.2 | + | 203784 | 0.66 | 0.914587 |
|
Target: 5'- --uGUGCauGGGCCCAggcGACGG-CGGAGg -3' miRNA: 3'- uuuCGCG--UCUGGGUa--CUGUCgGCCUC- -5' |
|||||||
| 2023 | 5' | -56.9 | NC_001347.2 | + | 182628 | 0.66 | 0.920221 |
|
Target: 5'- uGGGUGUAGGCCCGU--CuGCCGaGAGg -3' miRNA: 3'- uUUCGCGUCUGGGUAcuGuCGGC-CUC- -5' |
|||||||
| 2023 | 5' | -56.9 | NC_001347.2 | + | 37167 | 0.66 | 0.920221 |
|
Target: 5'- uGGGCGguGGCggCCuUGGCGGUCGGGu -3' miRNA: 3'- uUUCGCguCUG--GGuACUGUCGGCCUc -5' |
|||||||
| 2023 | 5' | -56.9 | NC_001347.2 | + | 127575 | 0.66 | 0.920221 |
|
Target: 5'- -cAGCGU--GCCCGUGgacGCGGCCGGc- -3' miRNA: 3'- uuUCGCGucUGGGUAC---UGUCGGCCuc -5' |
|||||||
| 2023 | 5' | -56.9 | NC_001347.2 | + | 189471 | 0.66 | 0.925624 |
|
Target: 5'- cGAGCGCAGA-CgGUGACGucgacGCCGGu- -3' miRNA: 3'- uUUCGCGUCUgGgUACUGU-----CGGCCuc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home