Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 153232 | 0.69 | 0.786733 |
Target: 5'- uGAGGCGCGGGCgCGcGuCGGCCGGcGa -3' miRNA: 3'- -UUUCGCGUCUGgGUaCuGUCGGCCuC- -5' |
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2023 | 5' | -56.9 | NC_001347.2 | + | 100188 | 0.69 | 0.777651 |
Target: 5'- --uGCGCGGcgccgcggccucGCCCA-GGUAGCCGGAGa -3' miRNA: 3'- uuuCGCGUC------------UGGGUaCUGUCGGCCUC- -5' |
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2023 | 5' | -56.9 | NC_001347.2 | + | 4509 | 0.7 | 0.720819 |
Target: 5'- -cGGCGUugacaguGGCCCAUGGCAGCgauucaagaGGAGg -3' miRNA: 3'- uuUCGCGu------CUGGGUACUGUCGg--------CCUC- -5' |
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2023 | 5' | -56.9 | NC_001347.2 | + | 135777 | 0.71 | 0.698227 |
Target: 5'- aAGGGCGCGGACCCcgGgucccguccauuccGCGGCgGGuGg -3' miRNA: 3'- -UUUCGCGUCUGGGuaC--------------UGUCGgCCuC- -5' |
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2023 | 5' | -56.9 | NC_001347.2 | + | 135209 | 0.72 | 0.641233 |
Target: 5'- cGAGGCGCcGACCCcggcugGGCGGCCgauGGGGg -3' miRNA: 3'- -UUUCGCGuCUGGGua----CUGUCGG---CCUC- -5' |
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2023 | 5' | -56.9 | NC_001347.2 | + | 136167 | 0.72 | 0.621106 |
Target: 5'- --cGUGCGGACCgCAgcACGGCCGGAa -3' miRNA: 3'- uuuCGCGUCUGG-GUacUGUCGGCCUc -5' |
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2023 | 5' | -56.9 | NC_001347.2 | + | 90510 | 0.73 | 0.531715 |
Target: 5'- cGAAGCGCcaagccucggAGACCgAgaaaucGGCGGCCGGAGa -3' miRNA: 3'- -UUUCGCG----------UCUGGgUa-----CUGUCGGCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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