miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2023 5' -56.9 NC_001347.2 + 153232 0.69 0.786733
Target:  5'- uGAGGCGCGGGCgCGcGuCGGCCGGcGa -3'
miRNA:   3'- -UUUCGCGUCUGgGUaCuGUCGGCCuC- -5'
2023 5' -56.9 NC_001347.2 + 100188 0.69 0.777651
Target:  5'- --uGCGCGGcgccgcggccucGCCCA-GGUAGCCGGAGa -3'
miRNA:   3'- uuuCGCGUC------------UGGGUaCUGUCGGCCUC- -5'
2023 5' -56.9 NC_001347.2 + 4509 0.7 0.720819
Target:  5'- -cGGCGUugacaguGGCCCAUGGCAGCgauucaagaGGAGg -3'
miRNA:   3'- uuUCGCGu------CUGGGUACUGUCGg--------CCUC- -5'
2023 5' -56.9 NC_001347.2 + 135777 0.71 0.698227
Target:  5'- aAGGGCGCGGACCCcgGgucccguccauuccGCGGCgGGuGg -3'
miRNA:   3'- -UUUCGCGUCUGGGuaC--------------UGUCGgCCuC- -5'
2023 5' -56.9 NC_001347.2 + 135209 0.72 0.641233
Target:  5'- cGAGGCGCcGACCCcggcugGGCGGCCgauGGGGg -3'
miRNA:   3'- -UUUCGCGuCUGGGua----CUGUCGG---CCUC- -5'
2023 5' -56.9 NC_001347.2 + 136167 0.72 0.621106
Target:  5'- --cGUGCGGACCgCAgcACGGCCGGAa -3'
miRNA:   3'- uuuCGCGUCUGG-GUacUGUCGGCCUc -5'
2023 5' -56.9 NC_001347.2 + 90510 0.73 0.531715
Target:  5'- cGAAGCGCcaagccucggAGACCgAgaaaucGGCGGCCGGAGa -3'
miRNA:   3'- -UUUCGCG----------UCUGGgUa-----CUGUCGGCCUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.