miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2023 5' -56.9 NC_001347.2 + 4509 0.7 0.720819
Target:  5'- -cGGCGUugacaguGGCCCAUGGCAGCgauucaagaGGAGg -3'
miRNA:   3'- uuUCGCGu------CUGGGUACUGUCGg--------CCUC- -5'
2023 5' -56.9 NC_001347.2 + 14311 0.66 0.902632
Target:  5'- --cGCGCu-GCCUGUGGCGGCCGaGGa -3'
miRNA:   3'- uuuCGCGucUGGGUACUGUCGGCcUC- -5'
2023 5' -56.9 NC_001347.2 + 37167 0.66 0.920221
Target:  5'- uGGGCGguGGCggCCuUGGCGGUCGGGu -3'
miRNA:   3'- uUUCGCguCUG--GGuACUGUCGGCCUc -5'
2023 5' -56.9 NC_001347.2 + 38948 0.68 0.838116
Target:  5'- --cGCGCacAGACCCucggGAUGGCCGGc- -3'
miRNA:   3'- uuuCGCG--UCUGGGua--CUGUCGGCCuc -5'
2023 5' -56.9 NC_001347.2 + 42355 0.66 0.914587
Target:  5'- -uGGCGCGGugUCGUGACA---GGAGa -3'
miRNA:   3'- uuUCGCGUCugGGUACUGUcggCCUC- -5'
2023 5' -56.9 NC_001347.2 + 68745 0.67 0.883015
Target:  5'- uGGAGCG-AGugCCGccGCAGCCGGcAGa -3'
miRNA:   3'- -UUUCGCgUCugGGUacUGUCGGCC-UC- -5'
2023 5' -56.9 NC_001347.2 + 75867 0.67 0.868855
Target:  5'- cGGGGCGCAGcGCCUccuugGUGAUcucGCUGGAGa -3'
miRNA:   3'- -UUUCGCGUC-UGGG-----UACUGu--CGGCCUC- -5'
2023 5' -56.9 NC_001347.2 + 81231 0.67 0.868855
Target:  5'- cGAAGCGCAGGCUgaCGUaACGuGCuCGGAGa -3'
miRNA:   3'- -UUUCGCGUCUGG--GUAcUGU-CG-GCCUC- -5'
2023 5' -56.9 NC_001347.2 + 90510 0.73 0.531715
Target:  5'- cGAAGCGCcaagccucggAGACCgAgaaaucGGCGGCCGGAGa -3'
miRNA:   3'- -UUUCGCG----------UCUGGgUa-----CUGUCGGCCUC- -5'
2023 5' -56.9 NC_001347.2 + 94376 0.68 0.846088
Target:  5'- uGGAGCGCGG-CCCGUGGauCGGCCa--- -3'
miRNA:   3'- -UUUCGCGUCuGGGUACU--GUCGGccuc -5'
2023 5' -56.9 NC_001347.2 + 100188 0.69 0.777651
Target:  5'- --uGCGCGGcgccgcggccucGCCCA-GGUAGCCGGAGa -3'
miRNA:   3'- uuuCGCGUC------------UGGGUaCUGUCGGCCUC- -5'
2023 5' -56.9 NC_001347.2 + 127575 0.66 0.920221
Target:  5'- -cAGCGU--GCCCGUGgacGCGGCCGGc- -3'
miRNA:   3'- uuUCGCGucUGGGUAC---UGUCGGCCuc -5'
2023 5' -56.9 NC_001347.2 + 135209 0.72 0.641233
Target:  5'- cGAGGCGCcGACCCcggcugGGCGGCCgauGGGGg -3'
miRNA:   3'- -UUUCGCGuCUGGGua----CUGUCGG---CCUC- -5'
2023 5' -56.9 NC_001347.2 + 135777 0.71 0.698227
Target:  5'- aAGGGCGCGGACCCcgGgucccguccauuccGCGGCgGGuGg -3'
miRNA:   3'- -UUUCGCGUCUGGGuaC--------------UGUCGgCCuC- -5'
2023 5' -56.9 NC_001347.2 + 136103 0.66 0.914587
Target:  5'- -cGGCGcCGGGCCU----CGGCCGGGGa -3'
miRNA:   3'- uuUCGC-GUCUGGGuacuGUCGGCCUC- -5'
2023 5' -56.9 NC_001347.2 + 136167 0.72 0.621106
Target:  5'- --cGUGCGGACCgCAgcACGGCCGGAa -3'
miRNA:   3'- uuuCGCGUCUGG-GUacUGUCGGCCUc -5'
2023 5' -56.9 NC_001347.2 + 140611 0.67 0.883015
Target:  5'- uGAGCGgGGGCCCGagcGACGGuCUGGGu -3'
miRNA:   3'- uUUCGCgUCUGGGUa--CUGUC-GGCCUc -5'
2023 5' -56.9 NC_001347.2 + 151357 0.68 0.824985
Target:  5'- --cGCGUGGGCCCAgccuggcgcacuacgUGACGGCCugucuuuuuguGGAGc -3'
miRNA:   3'- uuuCGCGUCUGGGU---------------ACUGUCGG-----------CCUC- -5'
2023 5' -56.9 NC_001347.2 + 153232 0.69 0.786733
Target:  5'- uGAGGCGCGGGCgCGcGuCGGCCGGcGa -3'
miRNA:   3'- -UUUCGCGUCUGgGUaCuGUCGGCCuC- -5'
2023 5' -56.9 NC_001347.2 + 154289 0.67 0.87604
Target:  5'- -uGGCGUGGugCuCAUGAC-GCCGGuGc -3'
miRNA:   3'- uuUCGCGUCugG-GUACUGuCGGCCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.