miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2023 5' -56.9 NC_001347.2 + 157210 0.66 0.908723
Target:  5'- -cGGcCGCGGugCgcUG-CAGCCGGAGg -3'
miRNA:   3'- uuUC-GCGUCugGguACuGUCGGCCUC- -5'
2023 5' -56.9 NC_001347.2 + 174004 0.68 0.811421
Target:  5'- -cGGCGCGGuCCCGUGAUGGagaaaacgccggCGGAGa -3'
miRNA:   3'- uuUCGCGUCuGGGUACUGUCg-----------GCCUC- -5'
2023 5' -56.9 NC_001347.2 + 182628 0.66 0.920221
Target:  5'- uGGGUGUAGGCCCGU--CuGCCGaGAGg -3'
miRNA:   3'- uUUCGCGUCUGGGUAcuGuCGGC-CUC- -5'
2023 5' -56.9 NC_001347.2 + 183504 0.67 0.87604
Target:  5'- -cAGCGCGucgcGuACCCGguGCAGCCGGAc -3'
miRNA:   3'- uuUCGCGU----C-UGGGUacUGUCGGCCUc -5'
2023 5' -56.9 NC_001347.2 + 189471 0.66 0.925624
Target:  5'- cGAGCGCAGA-CgGUGACGucgacGCCGGu- -3'
miRNA:   3'- uUUCGCGUCUgGgUACUGU-----CGGCCuc -5'
2023 5' -56.9 NC_001347.2 + 192360 0.69 0.795681
Target:  5'- uGGAGCGuCAGACCCAgGGCgcauguAGCCgacuuGGAGg -3'
miRNA:   3'- -UUUCGC-GUCUGGGUaCUG------UCGG-----CCUC- -5'
2023 5' -56.9 NC_001347.2 + 203784 0.66 0.914587
Target:  5'- --uGUGCauGGGCCCAggcGACGG-CGGAGg -3'
miRNA:   3'- uuuCGCG--UCUGGGUa--CUGUCgGCCUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.