Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 2023 | 5' | -56.9 | NC_001347.2 | + | 75867 | 0.67 | 0.868855 |
|
Target: 5'- cGGGGCGCAGcGCCUccuugGUGAUcucGCUGGAGa -3' miRNA: 3'- -UUUCGCGUC-UGGG-----UACUGu--CGGCCUC- -5' |
|||||||
| 2023 | 5' | -56.9 | NC_001347.2 | + | 68745 | 0.67 | 0.883015 |
|
Target: 5'- uGGAGCG-AGugCCGccGCAGCCGGcAGa -3' miRNA: 3'- -UUUCGCgUCugGGUacUGUCGGCC-UC- -5' |
|||||||
| 2023 | 5' | -56.9 | NC_001347.2 | + | 42355 | 0.66 | 0.914587 |
|
Target: 5'- -uGGCGCGGugUCGUGACA---GGAGa -3' miRNA: 3'- uuUCGCGUCugGGUACUGUcggCCUC- -5' |
|||||||
| 2023 | 5' | -56.9 | NC_001347.2 | + | 38948 | 0.68 | 0.838116 |
|
Target: 5'- --cGCGCacAGACCCucggGAUGGCCGGc- -3' miRNA: 3'- uuuCGCG--UCUGGGua--CUGUCGGCCuc -5' |
|||||||
| 2023 | 5' | -56.9 | NC_001347.2 | + | 37167 | 0.66 | 0.920221 |
|
Target: 5'- uGGGCGguGGCggCCuUGGCGGUCGGGu -3' miRNA: 3'- uUUCGCguCUG--GGuACUGUCGGCCUc -5' |
|||||||
| 2023 | 5' | -56.9 | NC_001347.2 | + | 14311 | 0.66 | 0.902632 |
|
Target: 5'- --cGCGCu-GCCUGUGGCGGCCGaGGa -3' miRNA: 3'- uuuCGCGucUGGGUACUGUCGGCcUC- -5' |
|||||||
| 2023 | 5' | -56.9 | NC_001347.2 | + | 4509 | 0.7 | 0.720819 |
|
Target: 5'- -cGGCGUugacaguGGCCCAUGGCAGCgauucaagaGGAGg -3' miRNA: 3'- uuUCGCGu------CUGGGUACUGUCGg--------CCUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home