Results 1 - 20 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 90510 | 0.73 | 0.531715 |
Target: 5'- cGAAGCGCcaagccucggAGACCgAgaaaucGGCGGCCGGAGa -3' miRNA: 3'- -UUUCGCG----------UCUGGgUa-----CUGUCGGCCUC- -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 183504 | 0.67 | 0.87604 |
Target: 5'- -cAGCGCGucgcGuACCCGguGCAGCCGGAc -3' miRNA: 3'- uuUCGCGU----C-UGGGUacUGUCGGCCUc -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 75867 | 0.67 | 0.868855 |
Target: 5'- cGGGGCGCAGcGCCUccuugGUGAUcucGCUGGAGa -3' miRNA: 3'- -UUUCGCGUC-UGGG-----UACUGu--CGGCCUC- -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 81231 | 0.67 | 0.868855 |
Target: 5'- cGAAGCGCAGGCUgaCGUaACGuGCuCGGAGa -3' miRNA: 3'- -UUUCGCGUCUGG--GUAcUGU-CG-GCCUC- -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 94376 | 0.68 | 0.846088 |
Target: 5'- uGGAGCGCGG-CCCGUGGauCGGCCa--- -3' miRNA: 3'- -UUUCGCGUCuGGGUACU--GUCGGccuc -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 38948 | 0.68 | 0.838116 |
Target: 5'- --cGCGCacAGACCCucggGAUGGCCGGc- -3' miRNA: 3'- uuuCGCG--UCUGGGua--CUGUCGGCCuc -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 151357 | 0.68 | 0.824985 |
Target: 5'- --cGCGUGGGCCCAgccuggcgcacuacgUGACGGCCugucuuuuuguGGAGc -3' miRNA: 3'- uuuCGCGUCUGGGU---------------ACUGUCGG-----------CCUC- -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 192360 | 0.69 | 0.795681 |
Target: 5'- uGGAGCGuCAGACCCAgGGCgcauguAGCCgacuuGGAGg -3' miRNA: 3'- -UUUCGC-GUCUGGGUaCUG------UCGG-----CCUC- -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 100188 | 0.69 | 0.777651 |
Target: 5'- --uGCGCGGcgccgcggccucGCCCA-GGUAGCCGGAGa -3' miRNA: 3'- uuuCGCGUC------------UGGGUaCUGUCGGCCUC- -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 154289 | 0.67 | 0.87604 |
Target: 5'- -uGGCGUGGugCuCAUGAC-GCCGGuGc -3' miRNA: 3'- uuUCGCGUCugG-GUACUGuCGGCCuC- -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 68745 | 0.67 | 0.883015 |
Target: 5'- uGGAGCG-AGugCCGccGCAGCCGGcAGa -3' miRNA: 3'- -UUUCGCgUCugGGUacUGUCGGCC-UC- -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 14311 | 0.66 | 0.902632 |
Target: 5'- --cGCGCu-GCCUGUGGCGGCCGaGGa -3' miRNA: 3'- uuuCGCGucUGGGUACUGUCGGCcUC- -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 127575 | 0.66 | 0.920221 |
Target: 5'- -cAGCGU--GCCCGUGgacGCGGCCGGc- -3' miRNA: 3'- uuUCGCGucUGGGUAC---UGUCGGCCuc -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 37167 | 0.66 | 0.920221 |
Target: 5'- uGGGCGguGGCggCCuUGGCGGUCGGGu -3' miRNA: 3'- uUUCGCguCUG--GGuACUGUCGGCCUc -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 182628 | 0.66 | 0.920221 |
Target: 5'- uGGGUGUAGGCCCGU--CuGCCGaGAGg -3' miRNA: 3'- uUUCGCGUCUGGGUAcuGuCGGC-CUC- -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 203784 | 0.66 | 0.914587 |
Target: 5'- --uGUGCauGGGCCCAggcGACGG-CGGAGg -3' miRNA: 3'- uuuCGCG--UCUGGGUa--CUGUCgGCCUC- -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 136103 | 0.66 | 0.914587 |
Target: 5'- -cGGCGcCGGGCCU----CGGCCGGGGa -3' miRNA: 3'- uuUCGC-GUCUGGGuacuGUCGGCCUC- -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 157210 | 0.66 | 0.908723 |
Target: 5'- -cGGcCGCGGugCgcUG-CAGCCGGAGg -3' miRNA: 3'- uuUC-GCGUCugGguACuGUCGGCCUC- -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 42355 | 0.66 | 0.914587 |
Target: 5'- -uGGCGCGGugUCGUGACA---GGAGa -3' miRNA: 3'- uuUCGCGUCugGGUACUGUcggCCUC- -5' |
|||||||
2023 | 5' | -56.9 | NC_001347.2 | + | 140611 | 0.67 | 0.883015 |
Target: 5'- uGAGCGgGGGCCCGagcGACGGuCUGGGu -3' miRNA: 3'- uUUCGCgUCUGGGUa--CUGUC-GGCCUc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home