miRNA display CGI


Results 1 - 20 of 370 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20244 5' -51 NC_004687.1 + 65566 0.66 0.996667
Target:  5'- uGCCGAGCGcgacgagauccAGUuccaggacgucaccgUCGAGCCG-CAGuuCCg -3'
miRNA:   3'- cCGGCUUGU-----------UCA---------------AGCUCGGCuGUU--GG- -5'
20244 5' -51 NC_004687.1 + 132833 0.66 0.996445
Target:  5'- uGCCGAAgAauGGgUCGAgGCCGAgaaGGCCu -3'
miRNA:   3'- cCGGCUUgU--UCaAGCU-CGGCUg--UUGG- -5'
20244 5' -51 NC_004687.1 + 54118 0.66 0.996445
Target:  5'- cGCUGGACGAag-CGAGCgcccCGGCGACg -3'
miRNA:   3'- cCGGCUUGUUcaaGCUCG----GCUGUUGg -5'
20244 5' -51 NC_004687.1 + 85201 0.66 0.996445
Target:  5'- aGGCCGAcgauCGGGcUCaGGCCGAggaaCGGCUg -3'
miRNA:   3'- -CCGGCUu---GUUCaAGcUCGGCU----GUUGG- -5'
20244 5' -51 NC_004687.1 + 64328 0.66 0.996445
Target:  5'- aGCUGGAuCAAGgccaGuGCCGACGccaACCg -3'
miRNA:   3'- cCGGCUU-GUUCaag-CuCGGCUGU---UGG- -5'
20244 5' -51 NC_004687.1 + 51392 0.66 0.996445
Target:  5'- aGCUgGAGCuGGaUCGGGCCGAUcAUCg -3'
miRNA:   3'- cCGG-CUUGuUCaAGCUCGGCUGuUGG- -5'
20244 5' -51 NC_004687.1 + 115170 0.66 0.996445
Target:  5'- cGCCGuggGCAGG-UCGcGCCGuGCuGCCg -3'
miRNA:   3'- cCGGCu--UGUUCaAGCuCGGC-UGuUGG- -5'
20244 5' -51 NC_004687.1 + 111590 0.66 0.996445
Target:  5'- uGGUCGAugaGCAcgaAGUcggcgcCGAGCUGACgGGCCu -3'
miRNA:   3'- -CCGGCU---UGU---UCAa-----GCUCGGCUG-UUGG- -5'
20244 5' -51 NC_004687.1 + 27775 0.66 0.996445
Target:  5'- uGCgGAAguAGUcCGGGUCGACGugaaagucGCCg -3'
miRNA:   3'- cCGgCUUguUCAaGCUCGGCUGU--------UGG- -5'
20244 5' -51 NC_004687.1 + 101117 0.66 0.996445
Target:  5'- uGGUgGGGCcuGaUUCaGGGCCgcGACAGCCg -3'
miRNA:   3'- -CCGgCUUGuuC-AAG-CUCGG--CUGUUGG- -5'
20244 5' -51 NC_004687.1 + 87814 0.66 0.996445
Target:  5'- cGCCGGACAAccgguccuGUUCGAGgCCaugGACCc -3'
miRNA:   3'- cCGGCUUGUU--------CAAGCUC-GGcugUUGG- -5'
20244 5' -51 NC_004687.1 + 145885 0.66 0.996445
Target:  5'- cGCCGAGaugca--GGGCCGguACAACCa -3'
miRNA:   3'- cCGGCUUguucaagCUCGGC--UGUUGG- -5'
20244 5' -51 NC_004687.1 + 84935 0.66 0.996445
Target:  5'- cGGUCcu-CAAGgcCGAcGCgGACAACCu -3'
miRNA:   3'- -CCGGcuuGUUCaaGCU-CGgCUGUUGG- -5'
20244 5' -51 NC_004687.1 + 77151 0.66 0.996091
Target:  5'- cGCCGAACGAGgacagcuuggagaacUcacugagcaUCGAGUCGAcCAGCg -3'
miRNA:   3'- cCGGCUUGUUC---------------A---------AGCUCGGCU-GUUGg -5'
20244 5' -51 NC_004687.1 + 100996 0.66 0.995839
Target:  5'- aGCa-AGCGGGUuuUCGuccacgucuGGCCGACGGCCc -3'
miRNA:   3'- cCGgcUUGUUCA--AGC---------UCGGCUGUUGG- -5'
20244 5' -51 NC_004687.1 + 75214 0.66 0.995839
Target:  5'- aGCCGAcCGAG--CGAGCCaACAAgCg -3'
miRNA:   3'- cCGGCUuGUUCaaGCUCGGcUGUUgG- -5'
20244 5' -51 NC_004687.1 + 63500 0.66 0.995839
Target:  5'- aGGCCGAGCAGGacUCGcuGGaCCGcGCGcgggagACCg -3'
miRNA:   3'- -CCGGCUUGUUCa-AGC--UC-GGC-UGU------UGG- -5'
20244 5' -51 NC_004687.1 + 8543 0.66 0.995839
Target:  5'- cGCCGGGCcguAGccaUgGAcGCCGAUGACCu -3'
miRNA:   3'- cCGGCUUGu--UCa--AgCU-CGGCUGUUGG- -5'
20244 5' -51 NC_004687.1 + 42533 0.66 0.995839
Target:  5'- gGGCCGcacccagcauCAGGUUCGgguGGCCGguuACGGCg -3'
miRNA:   3'- -CCGGCuu--------GUUCAAGC---UCGGC---UGUUGg -5'
20244 5' -51 NC_004687.1 + 97820 0.66 0.995839
Target:  5'- aGCuCGAccGCGAGUUC--GUCGACAACg -3'
miRNA:   3'- cCG-GCU--UGUUCAAGcuCGGCUGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.