miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20258 3' -54.3 NC_004687.1 + 72449 0.66 0.95201
Target:  5'- --cCGCCCaGUAGGCUugaccgcgCAUCGagGCGGUCu -3'
miRNA:   3'- cauGCGGG-CGUUCGA--------GUAGC--UGUCAG- -5'
20258 3' -54.3 NC_004687.1 + 10296 0.66 0.95201
Target:  5'- -gGCG-CCGuCGAGCUCcUCGACAcUCu -3'
miRNA:   3'- caUGCgGGC-GUUCGAGuAGCUGUcAG- -5'
20258 3' -54.3 NC_004687.1 + 22921 0.66 0.95201
Target:  5'- -gGCGCCgGUcAGggCGUCGACAG-Cg -3'
miRNA:   3'- caUGCGGgCGuUCgaGUAGCUGUCaG- -5'
20258 3' -54.3 NC_004687.1 + 34744 0.66 0.95201
Target:  5'- -aGCaCCCGCAGGCgggcCGUCG-CuGUCg -3'
miRNA:   3'- caUGcGGGCGUUCGa---GUAGCuGuCAG- -5'
20258 3' -54.3 NC_004687.1 + 23215 0.66 0.947762
Target:  5'- -aACGCCCGCcgcgaccacGAGCUgCGUUG-CGGUa -3'
miRNA:   3'- caUGCGGGCG---------UUCGA-GUAGCuGUCAg -5'
20258 3' -54.3 NC_004687.1 + 140222 0.66 0.947762
Target:  5'- cGUGcCGaCCUGguGGC-CAccUCGGCGGUCg -3'
miRNA:   3'- -CAU-GC-GGGCguUCGaGU--AGCUGUCAG- -5'
20258 3' -54.3 NC_004687.1 + 37891 0.66 0.947762
Target:  5'- ---gGuCCCGCu-GCUCAUCGACA-UCu -3'
miRNA:   3'- caugC-GGGCGuuCGAGUAGCUGUcAG- -5'
20258 3' -54.3 NC_004687.1 + 126078 0.66 0.943274
Target:  5'- -cGCGCUCGacccGCUCGUCGAgGGg- -3'
miRNA:   3'- caUGCGGGCguu-CGAGUAGCUgUCag -5'
20258 3' -54.3 NC_004687.1 + 17110 0.66 0.943274
Target:  5'- cUugG-CCGCGAGCUguUCGGCgaaguAGUCc -3'
miRNA:   3'- cAugCgGGCGUUCGAguAGCUG-----UCAG- -5'
20258 3' -54.3 NC_004687.1 + 9396 0.66 0.943274
Target:  5'- ---aGCCCGgGAcguaCUCGUCGGCGGUg -3'
miRNA:   3'- caugCGGGCgUUc---GAGUAGCUGUCAg -5'
20258 3' -54.3 NC_004687.1 + 60733 0.66 0.943274
Target:  5'- uGUugGCCgCGUc-GC-CGUCGACGGUa -3'
miRNA:   3'- -CAugCGG-GCGuuCGaGUAGCUGUCAg -5'
20258 3' -54.3 NC_004687.1 + 45782 0.66 0.943274
Target:  5'- cUACGaCCacaGCAAGCcggUCAaucccCGACAGUCg -3'
miRNA:   3'- cAUGC-GGg--CGUUCG---AGUa----GCUGUCAG- -5'
20258 3' -54.3 NC_004687.1 + 140684 0.66 0.943274
Target:  5'- --gUGCCCGCcGG---AUCGACGGUCg -3'
miRNA:   3'- cauGCGGGCGuUCgagUAGCUGUCAG- -5'
20258 3' -54.3 NC_004687.1 + 63720 0.66 0.938541
Target:  5'- -gACGCgggUUGCGcGGCUCGUCGACgccGGUCu -3'
miRNA:   3'- caUGCG---GGCGU-UCGAGUAGCUG---UCAG- -5'
20258 3' -54.3 NC_004687.1 + 38427 0.66 0.938541
Target:  5'- -cACGCuCCGaCGGcGuCUCcUCGACGGUCg -3'
miRNA:   3'- caUGCG-GGC-GUU-C-GAGuAGCUGUCAG- -5'
20258 3' -54.3 NC_004687.1 + 61727 0.66 0.938541
Target:  5'- -gGCGCCCGCAGggccaacaggucGCUCAggcCGGagauGUCg -3'
miRNA:   3'- caUGCGGGCGUU------------CGAGUa--GCUgu--CAG- -5'
20258 3' -54.3 NC_004687.1 + 98145 0.66 0.938541
Target:  5'- -cGCGCggaacuUCGCGucgaAGCUCAUCGGCuuGUCc -3'
miRNA:   3'- caUGCG------GGCGU----UCGAGUAGCUGu-CAG- -5'
20258 3' -54.3 NC_004687.1 + 89365 0.66 0.933563
Target:  5'- --uCGCCCGCAaugaaggucgAGgUCAUCGGCAc-- -3'
miRNA:   3'- cauGCGGGCGU----------UCgAGUAGCUGUcag -5'
20258 3' -54.3 NC_004687.1 + 63038 0.67 0.928337
Target:  5'- uUGC-CCCGC-AGCUCAccgagUCGGCGGa- -3'
miRNA:   3'- cAUGcGGGCGuUCGAGU-----AGCUGUCag -5'
20258 3' -54.3 NC_004687.1 + 114969 0.67 0.928337
Target:  5'- cGUGC-CCCGCGAGgaCG-CGGCAG-Ca -3'
miRNA:   3'- -CAUGcGGGCGUUCgaGUaGCUGUCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.