miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20258 3' -54.3 NC_004687.1 + 26100 0.67 0.928337
Target:  5'- -gAUGCCCGCGacAGcCUCGgcgCGACcgauGUCg -3'
miRNA:   3'- caUGCGGGCGU--UC-GAGUa--GCUGu---CAG- -5'
20258 3' -54.3 NC_004687.1 + 130833 0.67 0.928337
Target:  5'- gGUGCGCCuUGCGcAGCaCGUCGGCGugcGUCc -3'
miRNA:   3'- -CAUGCGG-GCGU-UCGaGUAGCUGU---CAG- -5'
20258 3' -54.3 NC_004687.1 + 109619 0.67 0.927801
Target:  5'- --uCGUCCGCAGGCcgggcaauauccgUCcacCGGCAGUCg -3'
miRNA:   3'- cauGCGGGCGUUCG-------------AGua-GCUGUCAG- -5'
20258 3' -54.3 NC_004687.1 + 66876 0.67 0.922863
Target:  5'- ---gGCCCGCcAGUcCGUacgCGACAGUCu -3'
miRNA:   3'- caugCGGGCGuUCGaGUA---GCUGUCAG- -5'
20258 3' -54.3 NC_004687.1 + 91502 0.67 0.922302
Target:  5'- cUACGCCCGCGAcaacauccGCUacucccgcaccgcCAUCGACcaggcuGUCg -3'
miRNA:   3'- cAUGCGGGCGUU--------CGA-------------GUAGCUGu-----CAG- -5'
20258 3' -54.3 NC_004687.1 + 51134 0.67 0.920605
Target:  5'- -aGCGCCCGCGagaagcaggccaAGCUCGcucacauccugagCGACaaGGUCg -3'
miRNA:   3'- caUGCGGGCGU------------UCGAGUa------------GCUG--UCAG- -5'
20258 3' -54.3 NC_004687.1 + 86327 0.67 0.917142
Target:  5'- -gGCGCCCGC-AGCcCgAUCGACucGGUg -3'
miRNA:   3'- caUGCGGGCGuUCGaG-UAGCUG--UCAg -5'
20258 3' -54.3 NC_004687.1 + 84576 0.67 0.917142
Target:  5'- -gGCGUcuaCCGCcuGCUCGUCGGCgAGaUCa -3'
miRNA:   3'- caUGCG---GGCGuuCGAGUAGCUG-UC-AG- -5'
20258 3' -54.3 NC_004687.1 + 29646 0.67 0.917142
Target:  5'- -gGCGCCUGgAuuGCUCGUgaGACGGUUg -3'
miRNA:   3'- caUGCGGGCgUu-CGAGUAg-CUGUCAG- -5'
20258 3' -54.3 NC_004687.1 + 123388 0.67 0.917142
Target:  5'- --cCGCUCGgAAGCUCAagagUCGuCAGUUg -3'
miRNA:   3'- cauGCGGGCgUUCGAGU----AGCuGUCAG- -5'
20258 3' -54.3 NC_004687.1 + 150285 0.67 0.911174
Target:  5'- -gACGacaaCCGCAAGgaCAUCGA-GGUCa -3'
miRNA:   3'- caUGCg---GGCGUUCgaGUAGCUgUCAG- -5'
20258 3' -54.3 NC_004687.1 + 108091 0.67 0.911174
Target:  5'- cGUGCGUCCGCucuugguGGCgcgGUCGACcucGUCg -3'
miRNA:   3'- -CAUGCGGGCGu------UCGag-UAGCUGu--CAG- -5'
20258 3' -54.3 NC_004687.1 + 12062 0.67 0.904961
Target:  5'- cUGCGCCCagGCcuuGGCgUCGUCGAgGGUg -3'
miRNA:   3'- cAUGCGGG--CGu--UCG-AGUAGCUgUCAg -5'
20258 3' -54.3 NC_004687.1 + 74949 0.67 0.904961
Target:  5'- ---aGCCCGC-AGCUCAUggccaUGACGGcCa -3'
miRNA:   3'- caugCGGGCGuUCGAGUA-----GCUGUCaG- -5'
20258 3' -54.3 NC_004687.1 + 131168 0.67 0.904961
Target:  5'- -cACGCCCGguGGCacCGUCGuCAGcCc -3'
miRNA:   3'- caUGCGGGCguUCGa-GUAGCuGUCaG- -5'
20258 3' -54.3 NC_004687.1 + 35858 0.67 0.904326
Target:  5'- uUGCGCUCGUAaucacccGGCUCGcCGccACGGUCg -3'
miRNA:   3'- cAUGCGGGCGU-------UCGAGUaGC--UGUCAG- -5'
20258 3' -54.3 NC_004687.1 + 117738 0.67 0.898505
Target:  5'- -gGCaCCCGCAAGguggccgaUCGgaUCGGCAGUCg -3'
miRNA:   3'- caUGcGGGCGUUCg-------AGU--AGCUGUCAG- -5'
20258 3' -54.3 NC_004687.1 + 16855 0.67 0.898505
Target:  5'- aGUugGCCCGCcAGCUCcgccgggUGGCGuacGUCu -3'
miRNA:   3'- -CAugCGGGCGuUCGAGua-----GCUGU---CAG- -5'
20258 3' -54.3 NC_004687.1 + 2892 0.68 0.89181
Target:  5'- -gAUGCCCGCcuGGUUCAucuucUCGACguAGUCc -3'
miRNA:   3'- caUGCGGGCGu-UCGAGU-----AGCUG--UCAG- -5'
20258 3' -54.3 NC_004687.1 + 100163 0.68 0.89181
Target:  5'- --uCGCCCGCuguucAGUUgucCAUCGACcAGUCg -3'
miRNA:   3'- cauGCGGGCGu----UCGA---GUAGCUG-UCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.