miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20258 5' -61.1 NC_004687.1 + 26710 0.65 0.731634
Target:  5'- aCGACGCCGACaaGGCCgacuacuucgcuCGGGgcgGCa- -3'
miRNA:   3'- gGCUGCGGCUG--UCGGac----------GCCCa--CGag -5'
20258 5' -61.1 NC_004687.1 + 83670 0.66 0.729745
Target:  5'- aCGGCGCCGACccguacaccaccaCCgaGCGcacGGUGCUCa -3'
miRNA:   3'- gGCUGCGGCUGuc-----------GGa-CGC---CCACGAG- -5'
20258 5' -61.1 NC_004687.1 + 153317 0.66 0.725958
Target:  5'- gCUGGCGCUGGuCGGCCccggagGCuccggGGGUGCg- -3'
miRNA:   3'- -GGCUGCGGCU-GUCGGa-----CG-----CCCACGag -5'
20258 5' -61.1 NC_004687.1 + 116859 0.66 0.725958
Target:  5'- cCCGAggacgaggaccCGCCGACuugggGCGaGGUGCUCc -3'
miRNA:   3'- -GGCU-----------GCGGCUGucggaCGC-CCACGAG- -5'
20258 5' -61.1 NC_004687.1 + 117929 0.66 0.716437
Target:  5'- gCGACugccagauCCGAuCGGCCaccuUGCGGGUGC-Cg -3'
miRNA:   3'- gGCUGc-------GGCU-GUCGG----ACGCCCACGaG- -5'
20258 5' -61.1 NC_004687.1 + 1300 0.66 0.716437
Target:  5'- cCCGGCGaucgggcuccaUCGGCAGCgUGauGGUGCg- -3'
miRNA:   3'- -GGCUGC-----------GGCUGUCGgACgcCCACGag -5'
20258 5' -61.1 NC_004687.1 + 129746 0.66 0.716437
Target:  5'- aCCGcACGCCGcCAGUCgGCauugGGGUcCUCg -3'
miRNA:   3'- -GGC-UGCGGCuGUCGGaCG----CCCAcGAG- -5'
20258 5' -61.1 NC_004687.1 + 139728 0.66 0.716437
Target:  5'- aCGGCGCCGACgcgcgaGGUgaGCGcGGUGacgUCg -3'
miRNA:   3'- gGCUGCGGCUG------UCGgaCGC-CCACg--AG- -5'
20258 5' -61.1 NC_004687.1 + 124846 0.66 0.716437
Target:  5'- aUCGGCGUcaCGAUGGCC-GCuaccuGGUGCUCu -3'
miRNA:   3'- -GGCUGCG--GCUGUCGGaCGc----CCACGAG- -5'
20258 5' -61.1 NC_004687.1 + 131431 0.66 0.716437
Target:  5'- cUCGGCGCCgucuggacGACAaCCUGCGGGcGaUCa -3'
miRNA:   3'- -GGCUGCGG--------CUGUcGGACGCCCaCgAG- -5'
20258 5' -61.1 NC_004687.1 + 107135 0.66 0.716437
Target:  5'- uCCGGCGCCGACguccucgucgAGCCc-CGGGagguccagcUGCUg -3'
miRNA:   3'- -GGCUGCGGCUG----------UCGGacGCCC---------ACGAg -5'
20258 5' -61.1 NC_004687.1 + 8824 0.66 0.70685
Target:  5'- gCGuguUGUCGuCGGUCUGCGGGUGagggUCg -3'
miRNA:   3'- gGCu--GCGGCuGUCGGACGCCCACg---AG- -5'
20258 5' -61.1 NC_004687.1 + 70839 0.66 0.70685
Target:  5'- aCCGAC-CCGAcCAGCCUGCaacccGGGaGUg- -3'
miRNA:   3'- -GGCUGcGGCU-GUCGGACG-----CCCaCGag -5'
20258 5' -61.1 NC_004687.1 + 35137 0.66 0.70685
Target:  5'- aCGACGUCGGCGGgccaaCUGCGGaG-GCg- -3'
miRNA:   3'- gGCUGCGGCUGUCg----GACGCC-CaCGag -5'
20258 5' -61.1 NC_004687.1 + 125779 0.66 0.70685
Target:  5'- gCUGGCGCCcucGGCcagggccucacgGGCCaccggcaggUGCGGGUGCa- -3'
miRNA:   3'- -GGCUGCGG---CUG------------UCGG---------ACGCCCACGag -5'
20258 5' -61.1 NC_004687.1 + 118637 0.66 0.70685
Target:  5'- gUCGGCauGCCGGUGGUCUGCGaGGUgaucaaGCUCg -3'
miRNA:   3'- -GGCUG--CGGCUGUCGGACGC-CCA------CGAG- -5'
20258 5' -61.1 NC_004687.1 + 47246 0.66 0.697204
Target:  5'- gUCGuCGCUGA--GCCUGCGGGUcuGCcCg -3'
miRNA:   3'- -GGCuGCGGCUguCGGACGCCCA--CGaG- -5'
20258 5' -61.1 NC_004687.1 + 119426 0.66 0.697204
Target:  5'- aCCGACGCCGAUGGCgaaguccaggGCcaaGGUGCcCg -3'
miRNA:   3'- -GGCUGCGGCUGUCGga--------CGc--CCACGaG- -5'
20258 5' -61.1 NC_004687.1 + 101258 0.66 0.697204
Target:  5'- cUCGGCgGUCGuCAGCUccucGCGGGUGCc- -3'
miRNA:   3'- -GGCUG-CGGCuGUCGGa---CGCCCACGag -5'
20258 5' -61.1 NC_004687.1 + 138981 0.66 0.697204
Target:  5'- cUCGGCGgCGGCAGCggagGCccGGGUGC-Cg -3'
miRNA:   3'- -GGCUGCgGCUGUCGga--CG--CCCACGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.