miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2026 3' -62.1 NC_001347.2 + 168310 0.66 0.773238
Target:  5'- uGCCGCGG-CGCuCGGuc-GACGCGUUg -3'
miRNA:   3'- uCGGUGUCgGCG-GCCucuCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 197115 0.66 0.773238
Target:  5'- cGCCGCAaggccCCGCUGGAacucGGGCcCGCCg -3'
miRNA:   3'- uCGGUGUc----GGCGGCCUc---UCUGcGCGG- -5'
2026 3' -62.1 NC_001347.2 + 16832 0.66 0.773238
Target:  5'- cGGCgCGCGGCCagGCUGGAacgcaacgGAGGCuGCGUa -3'
miRNA:   3'- -UCG-GUGUCGG--CGGCCU--------CUCUG-CGCGg -5'
2026 3' -62.1 NC_001347.2 + 135825 0.66 0.773238
Target:  5'- aAGCCGgcggaGGUCGCCGGgagcagcgAGGGAuccCGgGCCg -3'
miRNA:   3'- -UCGGUg----UCGGCGGCC--------UCUCU---GCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 39547 0.66 0.773238
Target:  5'- gGGCCAUGGgCGCCGGAcaccuccGACGU-CCa -3'
miRNA:   3'- -UCGGUGUCgGCGGCCUcu-----CUGCGcGG- -5'
2026 3' -62.1 NC_001347.2 + 147864 0.66 0.773238
Target:  5'- cGGCCugGG-CGCCGcGGGAaaggccguuGGCGUaGCCa -3'
miRNA:   3'- -UCGGugUCgGCGGC-CUCU---------CUGCG-CGG- -5'
2026 3' -62.1 NC_001347.2 + 166069 0.66 0.773238
Target:  5'- gAGUCGCGGCgGuuGGGGcgccgauucccAGG-GCGCCu -3'
miRNA:   3'- -UCGGUGUCGgCggCCUC-----------UCUgCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 100362 0.66 0.773238
Target:  5'- cGCCACcGCCGCCaGGAcagucgcaaaaGAGGCuCGgCa -3'
miRNA:   3'- uCGGUGuCGGCGG-CCU-----------CUCUGcGCgG- -5'
2026 3' -62.1 NC_001347.2 + 38729 0.66 0.770611
Target:  5'- cGGCgCGCAGCaacgucugucggagCGCCGGcuGAGGCagcaGCGUCg -3'
miRNA:   3'- -UCG-GUGUCG--------------GCGGCCu-CUCUG----CGCGG- -5'
2026 3' -62.1 NC_001347.2 + 36795 0.66 0.764442
Target:  5'- cGGUCGCGGaCCGCggaguCGGGGAGAaGCuCCu -3'
miRNA:   3'- -UCGGUGUC-GGCG-----GCCUCUCUgCGcGG- -5'
2026 3' -62.1 NC_001347.2 + 56600 0.66 0.764442
Target:  5'- uGCCACGGUacgUGUCGGGGuu-UGUGCCc -3'
miRNA:   3'- uCGGUGUCG---GCGGCCUCucuGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 65721 0.66 0.764442
Target:  5'- cGGUgGCGGCgG-UGGAG-GGCGCGCg -3'
miRNA:   3'- -UCGgUGUCGgCgGCCUCuCUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 116741 0.66 0.764442
Target:  5'- cGGUCACGGCCaacagagccagGCCGGAaaGAGcugcgacaGCGUGaCCg -3'
miRNA:   3'- -UCGGUGUCGG-----------CGGCCU--CUC--------UGCGC-GG- -5'
2026 3' -62.1 NC_001347.2 + 207021 0.66 0.764442
Target:  5'- cAGCCgcugacACAGUCGCUGGGG-GAUccguaGgGCCa -3'
miRNA:   3'- -UCGG------UGUCGGCGGCCUCuCUG-----CgCGG- -5'
2026 3' -62.1 NC_001347.2 + 100948 0.66 0.763557
Target:  5'- cGCCGCcGCCGCgaUGGAGAacuggucGGCGCucgagcuccuGCCu -3'
miRNA:   3'- uCGGUGuCGGCG--GCCUCU-------CUGCG----------CGG- -5'
2026 3' -62.1 NC_001347.2 + 145562 0.66 0.761783
Target:  5'- cGCCGCGGCCGUCucgggugucuucagGGAGccGGAC-CGaCCu -3'
miRNA:   3'- uCGGUGUCGGCGG--------------CCUC--UCUGcGC-GG- -5'
2026 3' -62.1 NC_001347.2 + 143000 0.66 0.755544
Target:  5'- cGGCgGCGGCgGUggUGGAGgaGGuuGCGCCg -3'
miRNA:   3'- -UCGgUGUCGgCG--GCCUC--UCugCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 58867 0.66 0.755544
Target:  5'- cGGCaGCGGCaCGCCGGAGuGACcucucccaCGCa -3'
miRNA:   3'- -UCGgUGUCG-GCGGCCUCuCUGc-------GCGg -5'
2026 3' -62.1 NC_001347.2 + 172049 0.66 0.755544
Target:  5'- cGCCAgcGCgCGCUGGGaAGcgcuGCGCGCCg -3'
miRNA:   3'- uCGGUguCG-GCGGCCUcUC----UGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 135964 0.66 0.755544
Target:  5'- cGGCCG-GGCCGUCGGAuGGGgGgGUCg -3'
miRNA:   3'- -UCGGUgUCGGCGGCCUcUCUgCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.