miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2026 3' -62.1 NC_001347.2 + 2008 0.84 0.070267
Target:  5'- gAGCgGCacggagacggaGGCCGCCGGcGGGGACGCGCCg -3'
miRNA:   3'- -UCGgUG-----------UCGGCGGCC-UCUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 92258 0.8 0.143393
Target:  5'- aGGCCGUGGCCGCCGccauGAGGCGCGUCa -3'
miRNA:   3'- -UCGGUGUCGGCGGCcu--CUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 108154 0.79 0.157791
Target:  5'- aGGCgGCGGCCGCa-GAG-GGCGCGCCg -3'
miRNA:   3'- -UCGgUGUCGGCGgcCUCuCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 88241 0.77 0.213945
Target:  5'- gGGUCGCuGCCGCCGGugaAGAGAgCGCGgCg -3'
miRNA:   3'- -UCGGUGuCGGCGGCC---UCUCU-GCGCgG- -5'
2026 3' -62.1 NC_001347.2 + 166621 0.76 0.239762
Target:  5'- cGUCAC-GCCGUCcuccGAGAGGCGCGCCc -3'
miRNA:   3'- uCGGUGuCGGCGGc---CUCUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 199019 0.76 0.25647
Target:  5'- cGUC-CAGCCGCCGcAGAGACGUGgCg -3'
miRNA:   3'- uCGGuGUCGGCGGCcUCUCUGCGCgG- -5'
2026 3' -62.1 NC_001347.2 + 135189 0.76 0.250797
Target:  5'- cGCCACAGCCuGgUGGGGuccGAgGCGCCg -3'
miRNA:   3'- uCGGUGUCGG-CgGCCUCu--CUgCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 197635 0.76 0.25647
Target:  5'- uGCCGCAGCUGCUGGAGc-GCG-GCCu -3'
miRNA:   3'- uCGGUGUCGGCGGCCUCucUGCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 113183 0.76 0.234399
Target:  5'- cGCCcCAGCCGCCGGcGuGGCG-GCCu -3'
miRNA:   3'- uCGGuGUCGGCGGCCuCuCUGCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 85650 0.75 0.26813
Target:  5'- aGGCCACGGCCGCCGcGu----CGUGCCu -3'
miRNA:   3'- -UCGGUGUCGGCGGC-CucucuGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 112612 0.75 0.274118
Target:  5'- -uCCAUA-CCGcCCGGAGAGuCGCGCCg -3'
miRNA:   3'- ucGGUGUcGGC-GGCCUCUCuGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 210009 0.74 0.332867
Target:  5'- gGGUCGCGGuCCGCCGGuguuGGGAC-CGCUu -3'
miRNA:   3'- -UCGGUGUC-GGCGGCCu---CUCUGcGCGG- -5'
2026 3' -62.1 NC_001347.2 + 63115 0.74 0.332867
Target:  5'- cGCCGCGGCCGCCGcuguggccGGAGugccCGuCGCCg -3'
miRNA:   3'- uCGGUGUCGGCGGCc-------UCUCu---GC-GCGG- -5'
2026 3' -62.1 NC_001347.2 + 39793 0.74 0.325905
Target:  5'- gAGCgCACAGCCGCCucccGGGCGCGCa -3'
miRNA:   3'- -UCG-GUGUCGGCGGccucUCUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 199687 0.74 0.299146
Target:  5'- cGGCCuugGguGUCGCCGGcgagccccGAGGCGCGCCc -3'
miRNA:   3'- -UCGG---UguCGGCGGCCu-------CUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 16067 0.73 0.376901
Target:  5'- cGGCCcgGCAGCaccauGCCGGAGcuACGCGaCCa -3'
miRNA:   3'- -UCGG--UGUCGg----CGGCCUCucUGCGC-GG- -5'
2026 3' -62.1 NC_001347.2 + 152440 0.73 0.339937
Target:  5'- gGGCCGCAGCCGuuGGuGGAaacuACGUGCa -3'
miRNA:   3'- -UCGGUGUCGGCggCC-UCUc---UGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 163629 0.73 0.354402
Target:  5'- gAGCCGCGGCUGCCcGGGu--CGCGCa -3'
miRNA:   3'- -UCGGUGUCGGCGGcCUCucuGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 2093 0.73 0.369295
Target:  5'- cAGCCguACGgcGCCGCCGGcGGGGGCGCGa- -3'
miRNA:   3'- -UCGG--UGU--CGGCGGCC-UCUCUGCGCgg -5'
2026 3' -62.1 NC_001347.2 + 183474 0.73 0.376901
Target:  5'- cGCCuCGGCC-UCGG-GAGACGCGCg -3'
miRNA:   3'- uCGGuGUCGGcGGCCuCUCUGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.